Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0947 ATGATTATTTCTCAGAAACTTGAAATTTCTCTCTGCCTGTTACTCATGTTTGTTCTGGTTGGACCAGGAGTTTGCCAGAATGAGTGCAGACCAAGGTGCGGCAACAACGATAACGTGTCTATCAAATTCCCTTTTCGACTCAAAGACAGCCCAAGGCATTGTGGCTACCCAGGATTTGAACTGTCTTGTCCCGACACAAACCAAACGGCTCTAGAGCTTCCATTTCCAGTGAAATTCTTCATCAAGAGCATTGATTACAAACATCAGACACTTCAAGTCTATGACCCAGAAAAATGTCTTCCACGACAGATACTTAACTTCCTTAACTTATCATCTTCAGCTTTCCACTTCCAAGAAATATTGTATAATAACTATACATTCTTTAGTTGCACCCCTTCAATAGAGAGAGAAGTGCATAGCTCTCTTATCTCATGTCTTAGTGATTCCACAAAGCAAATTCTTGCTGTTCATGATTATAACATCGTTGGGGACCCTTCCTTCGTGGGTTGTACCAAGATCTCTGACGTTTTCTCTGCTCCATGGGAGATAGAAAGCAATTCTGTCGATGATACAGTACTTTTGAGCTGGTCTAAGCCTGACTGTGGAAGATGTGAAGCAAAGAGACAGAGCTGTGGATTGGAGAACGGCACTCTCGGCGGCGAAACAAAATGTTCTCTGTTCAAACCCAATCACCACAGAGGTACATCCTATTATAAGAGAAAACTAGAAATACCAGGTTTGGTTGTAGGTTCCTTACTCGTTGTACTAGTAATGGGTGCATTATTATATCACACATATCTGACTGATAAAGCAGAGAAAGTAAATCGAGCAAGGATCAACATGTTTTTACAAGAATACAAAACTCTCAAGCCCGCCAGGTACTCCTATGCCGATATCAAAAGGATTACAAACCAATTCAAGGACAAGTTGGGACAAGGAGCTTATGGAACTGTGTACAAAGGAAGGCTTTCTGATGAAGTTCAAGTTGCAGCTAAGATCCTCAACAACTCCAAGGGAAATGGTGAAGAGTTTATAAATGAAGTAGAAATAATTGGTCGAATCCACCATGTGAATGTAGTTCGCTTGGTCGGCTTTTGTGCTGATGGCTTCAGACGAGCTCTTGTTTACGAGTTCTTAGAAAACGGATCGTTGAAGAATTATATATCCCCACAAGACAATCAGGTGCAGCCCCATTCTCTTGGTTTGGAGAAGCTACATGAAATAGCTATTGGCATAGCGAAAGGAATTGAGTATCTTCATCAAGGGTGTGATCAAAGAATCCTCCATTTTGATATCAAACCTCATAACATCCTTCTAGACCAATACTTCACTCCAAAAATCTCGGATTTCGGTTTGGCCAAGCTGTGCTCCAAAGAACAAAGTATAGTGTCAATGACTACCGTAAAAGGGACAATGGGGTACATCGCTCCAGAAGTTTTCTCTAGAAACTTTGGCAGTGTGTCTTATAAGGCAGACGTGTATAGTTTCGGAATGTTACTACTTGAAATGGTAGGAGAAAAAAAGAACATCAGTGCAATGGAAGAAGATGGTGGATATGTCGGGAATGAATCTTTAAGCCTCGAAAAAAGGGGGCTTCAGAATCATGTTGGTGAGGAAGATGTTGATGAGGCTAAAATTGCAAAGAAACTTAGAACTGTGGGGCTATGGTGCATTCAGTGGCACCCAGCCAATCGTCCTTCCATCAAGGTAGTGCTTCAGATGTTGGAAGGAGAAGATGATAACTTAACTTCGCCTCCTATTCCGTTTACCTCTACAGGTCCAACCACAACAAACGGCAGACGACAAAATCTGGAGTTAGAAATTATCCCCGAAATAGAATGA 1842 41.48 MIISQKLEISLCLLLMFVLVGPGVCQNECRPRCGNNDNVSIKFPFRLKDSPRHCGYPGFELSCPDTNQTALELPFPVKFFIKSIDYKHQTLQVYDPEKCLPRQILNFLNLSSSAFHFQEILYNNYTFFSCTPSIEREVHSSLISCLSDSTKQILAVHDYNIVGDPSFVGCTKISDVFSAPWEIESNSVDDTVLLSWSKPDCGRCEAKRQSCGLENGTLGGETKCSLFKPNHHRGTSYYKRKLEIPGLVVGSLLVVLVMGALLYHTYLTDKAEKVNRARINMFLQEYKTLKPARYSYADIKRITNQFKDKLGQGAYGTVYKGRLSDEVQVAAKILNNSKGNGEEFINEVEIIGRIHHVNVVRLVGFCADGFRRALVYEFLENGSLKNYISPQDNQVQPHSLGLEKLHEIAIGIAKGIEYLHQGCDQRILHFDIKPHNILLDQYFTPKISDFGLAKLCSKEQSIVSMTTVKGTMGYIAPEVFSRNFGSVSYKADVYSFGMLLLEMVGEKKNISAMEEDGGYVGNESLSLEKRGLQNHVGEEDVDEAKIAKKLRTVGLWCIQWHPANRPSIKVVLQMLEGEDDNLTSPPIPFTSTGPTTTNGRRQNLELEIIPEIE 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54753152 54755461 - Conep01aG0099000.1 Cone1ag0947 431638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0947 613 PANTHER RUST RESISTANCE KINASE LR10-RELATED 233 593 IPR045874 GO:0004672(InterPro)
Cone1ag0947 613 ProSiteProfiles Protein kinase domain profile. 304 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0947 613 Gene3D Phosphorylase Kinase; domain 1 279 378 - -
Cone1ag0947 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0947 613 Pfam Wall-associated receptor kinase galacturonan-binding 29 95 IPR025287 GO:0030247(InterPro)
Cone1ag0947 613 Pfam Protein kinase domain 306 573 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0947 613 FunFam serine/threonine-protein kinase PBS1-like 272 378 - -
Cone1ag0947 613 SUPERFAMILY Protein kinase-like (PK-like) 281 576 IPR011009 -
Cone1ag0947 613 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524(InterPro)
Cone1ag0947 613 Gene3D Transferase(Phosphotransferase) domain 1 379 584 - -
Cone1ag0947 613 FunFam PR5-like receptor kinase 379 586 - -
Cone1ag0947 613 SMART serkin_6 304 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0459 Cone-Chr15:2153757 Cone1ag0947 Cone-Chr1:54753152 1.72E-30 dispersed
Cone1ag0947 Cone-Chr1:54753152 Cone5ag0664 Cone-Chr5:2842273 0 dispersed
Cone1ag0947 Cone-Chr1:54753152 Cone1ag0948 Cone-Chr1:54756177 4.21E-116 tandem
Cone1ag0947 Cone-Chr1:54753152 Cone14ag0379 Cone-Chr14:1772637 1.22E-54 wgd
Cone1ag0947 Cone-Chr1:54753152 Cone5ag0663 Cone-Chr5:2834063 3.40E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82488 PF00107 ADH_zinc_N 4.10E-14 CL0063 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0947 - - - 0.0