Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0948 ATGGTTGGGTTTAGAATGCCTTCATTCTCTGCAGGGCTGGTTGTTGTCTTTATAGCAGTTGTTCTTCGTCAGGTGGCCTGCAAAAAACATTGTCCCCCTTCGTCTTGCGGGGATATTCCCATAAAACACCCTTTCCGACTGAAAGACGATCCTCGACACTGTGAGGACACAAGGTACAACCTCTCATGCGAAAACAAACGAACAATCTTGTACTTACATTCCGGAAAGTACTTGGTCTATTCCATAAACTATGATCATAATCACACAATCAGAGTTGTTGATGATACTATATTGAATCGATTGGACAACTGCTCCTTTATTCCTAATTATTCTTTGACATTTAACAACTTCACTGCGACCGATCCATACGGGACCGGTCAAACAAAAAACAAACTTAGTTTTCTTGAGGTGAACGATTATCAGATACTGTCAACGCAGATAATCTTCTTCAACTGTGCAAACCCAGTAACCAAATCTTCTTCTTTCGATGTTAATACCACTACGTGCATGAACGCTACTTATTCCAACTCTAGTTTATCTCTGTCTGGAGGATACTCTTATGCTAAGATTGGGAGCTTGGAAGCCTCAGAGCTTGAGATATCTTGCCGAATAAACATGATGGCCATGACGTCGTGGCCGGTTAAAGATGATAAGATAAATATTTCTTACGAAGATATTCGTGGTATGATATTATATGGGTTTGAGCTTTCATGGCGTCGCTCTTGCTATTTCGAAAATAAGTTCAACTGTGCCCCTATATGCAGCACTTTTCCAAAATTGCCTTTTGCAAGTTGTGGCATAGTAACTCTGAACAACTATCTTGACCTTACAGGAATTGTATCGATTTTTGTGGTAATTGGCGCTATTGTGTATTGCACGGCAATAAAATTTGTCTTTGGCACTCCATTTGTGATTGCATTTTTGGTCTACAAATGGCGAAGACGGCATTTGTCAGGGTATGATAACATTGAAGAGTATTTACAGAGCCAAAATAACCTCAACCCTATTAGGTACTCTTACCCCGACATTAAGAAGATGACTCAATCTTTCCAGCAAAAGTTAGGAGAAGGAGGATTTGGCTCTGTATACAAAGGAAAGCTTAGAAGTGGAAGTCTTGTTGCAGTGAAGTTATTGTCGAGTAAGTCTAAAGCTAATGGCCAAGACTTCATCAATGAAGTTGCTACAATTGGCAGTATCCACCATGTTAATGTGGTCCAACTTATCGGCTTCTGCGTTGAAAGATCAAAGCGTGCTCTTGTTTATGACTTCATGCCAAATGGGTCTCTTGATAAACACATATTCTCTCCGGAAGGAAGAGCTGCTATAAGCTACGAGAAGATGTTTGAAATCTCTCTTGCAATTGCTCGTGGGATTGAGTATCTCCATCGAGGGTGTGAGAAGCAAATTCTGCATTTTGATATCAAGCCTCATAACATTCTTCTAGATGAGAATTTTACACCCAAAGTTTCCGATTTCGGGTTGGCTAGATTGTTTTCAGCAGATAAAAGCATTGTGAATTTAACTGCCCCGAGAGGAACACTAGGTTACATGGCTCCTGAGCTATGCTACAAAAACTTTGGAGGGGTTTCTCATAAAGCTGATGTCTATAGCTTTGGGATGTTATTGATGGAAATGGCAGGAAAAAGGAAGAATGTTAATAACTTCGCGGAGCACTCAAGCCAAGTATTCTTCCCTTTATGGGCTTATGACCAATTCAACAGAGGGAAAGACATTGAAATTGAAGATGCCACAGAAGAGGAGATAGGACTAACAAAGAAGATGATGATAGTGGCGCTCTGGTGTATGCAAATGAGGCCTAGTAATCGTCCTCCCATGAATAGAGTTGTAAAAATGCTCGAGGGTGAACTAGAAAGCTTACAAATGCCTCCTTACAAGCCTTTGGAATTTCCAAAAGAGATGCAGTCTGTTGAGGATGTCCAAAAAAACACTGCTACGTCATCTTCATCAATTCCATCAGATGATTGGTCCTCTGAATCTGTCGGTTTGATTTTTAATTCCAACTTAGGAACATAA 2034 40.36 MVGFRMPSFSAGLVVVFIAVVLRQVACKKHCPPSSCGDIPIKHPFRLKDDPRHCEDTRYNLSCENKRTILYLHSGKYLVYSINYDHNHTIRVVDDTILNRLDNCSFIPNYSLTFNNFTATDPYGTGQTKNKLSFLEVNDYQILSTQIIFFNCANPVTKSSSFDVNTTTCMNATYSNSSLSLSGGYSYAKIGSLEASELEISCRINMMAMTSWPVKDDKINISYEDIRGMILYGFELSWRRSCYFENKFNCAPICSTFPKLPFASCGIVTLNNYLDLTGIVSIFVVIGAIVYCTAIKFVFGTPFVIAFLVYKWRRRHLSGYDNIEEYLQSQNNLNPIRYSYPDIKKMTQSFQQKLGEGGFGSVYKGKLRSGSLVAVKLLSSKSKANGQDFINEVATIGSIHHVNVVQLIGFCVERSKRALVYDFMPNGSLDKHIFSPEGRAAISYEKMFEISLAIARGIEYLHRGCEKQILHFDIKPHNILLDENFTPKVSDFGLARLFSADKSIVNLTAPRGTLGYMAPELCYKNFGGVSHKADVYSFGMLLMEMAGKRKNVNNFAEHSSQVFFPLWAYDQFNRGKDIEIEDATEEEIGLTKKMMIVALWCMQMRPSNRPPMNRVVKMLEGELESLQMPPYKPLEFPKEMQSVEDVQKNTATSSSSIPSDDWSSESVGLIFNSNLGT 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54756177 54759521 + Conep01aG0099100.1 Cone1ag0948 431639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0948 677 MobiDBLite consensus disorder prediction 643 665 - -
Cone1ag0948 677 Gene3D Phosphorylase Kinase; domain 1 321 423 - -
Cone1ag0948 677 SMART serkin_6 348 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0948 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0948 677 MobiDBLite consensus disorder prediction 640 665 - -
Cone1ag0948 677 Pfam Wall-associated receptor kinase galacturonan-binding 31 94 IPR025287 GO:0030247(InterPro)
Cone1ag0948 677 FunFam serine/threonine-protein kinase PBS1-like 319 423 - -
Cone1ag0948 677 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524(InterPro)
Cone1ag0948 677 FunFam PR5-like receptor kinase 424 631 - -
Cone1ag0948 677 ProSiteProfiles Protein kinase domain profile. 348 623 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0948 677 SUPERFAMILY Protein kinase-like (PK-like) 326 620 IPR011009 -
Cone1ag0948 677 PANTHER RUST RESISTANCE KINASE LR10-RELATED 203 642 IPR045874 GO:0004672(InterPro)
Cone1ag0948 677 Gene3D Transferase(Phosphotransferase) domain 1 424 635 - -
Cone1ag0948 677 Pfam Protein kinase domain 351 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0948 Cone-Chr1:54756177 Cone5ag0663 Cone-Chr5:2834063 0 dispersed
Cone1ag0947 Cone-Chr1:54753152 Cone1ag0948 Cone-Chr1:54756177 4.21E-116 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82489 PF00854 PTR2 3.40E-11 CL0015 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0948 - - - 0.0