Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0952 ATGCGGAGTGAAGAGAAAGGAATGGAAGACATATGGACTCTGTTTTGCGGCGACTGTTCCAACAATGATGGAGAGCGGCCGTGTCGTCCTTCCACCTTTGATTTTCTATTCAATCCCTCTTCATGCATCACTCATGCACTGATCATATGCTTTGATCTCATCCTTTTCATCGTGCTTCTATTCACCATCTTCCACAATTCCTCAACCCAAAACACACTCCACCTCCCAACCCGGTTCCGTAGTTACTCGACTCTGCAGATACTATCCGGTATCTTCAATGCCTGTCTCGGATTAACCTACTCGACTTTAGCCGTCTTATACTTGTCGAAAATCCAGACTGCTCTGCCCTTACACTCATGGTTACCATTGCTCCTTCATGGCTTAACTTGGTTTTTCATGAGCTTAATCACTAGTATTCGCGGCAAACGATTTACAAGGAGCTCGCTTAGACTCTTCTCCATCATTGCCTTTGTTTTCACTGCCCTTGTCTGCGCCCTGTCACTGTCCGGTTCGATTTCAAGCAAAGTTGTTTCGATGAAGACGGCTTTAGATGTGCTATCATTTCCAGGAGCAACATTGCTCTTGTTTTGCACTTACCGACGTTTCGAACATGAGGGGGATGATCATGAGGGTGTGAATGGAAATGACCTTTACACGCCATTAACCAGCGAGGCTAACGGAATTACTAAGACCAACGCTGTTACTCCGTTTTCCAAAGCCGGATTCTTTGCTAAAATGTCATTCTGGTGGTTAAACTCTTTGATGAAAAGGGGCAGACAGAAAACCTTAGAGGACGAAGATATTCCAAAGCTGAGAGAAGCAGAGCGAGCTGGAACCTGCTACTTACAGTTTGTCCAGCAGCTGAATAACCATAAACTAACCCAACCGAATTCTCAACCGTCAATCTTAAAGACCATAATCTTATGTCATGGGAAGGAGATTTTTGTTTCCGGGTTTTTCGCTTTGTTAAAGATTCTAACTGTTTCGGCGGGCCCTCTACTTCTTAACGCCTTCATTCTAGTTGCTGAAGGAAATAAAAGCTTCAAAAATGAAGGCTACCTATTGGTTATCACCCTCTTCTTGTCAAAGAGCATAGAATCCTTATCACAACGACAATGGTATTTCCGAAGCCGGCTCATCGGTCTCAAAGTGAGATCGCTTCTAACGGCCGCCATTTACAAGAAACAACTAAGATTGTCTAGTGCGGCTAGATTAGTTCACTCAGGTGGTGAGGTTATGAACTATGTCACGGTTGATGCTTATAGGATTGGAGAATTCCCGTTTTGGTTCCATCAAACTTGGACAACAAGTCTTCAACTCTGCATAGCCTTAGTTATTCTCTTTCGAGCTGTAGGCCTAGCTACAGTAGCTGCATTGGTAGTTATTATTCTCTGTGTTCTTTGCAACACCCCTCTTGCTAAGTTACAGCACAAGTTTCAAACTAAGCTCATGGAAACTCAAGATGCGAGACTAAAGGCATGCACAGAATCTCTAGTGAACATGAAGGTGTTGAAGTTATATGCATGGGAAAAGCATTTCAAGAATGTGATAGAGAGTTTGAGGAGACAGGAGTATAAGTGGTTGTCCGCTGTACAAATACGGAAAGCGTATAATGGATTTCTCTTTTGGTCATCTCCCGTTCTTGTCTCGGCAGCAACTTTTGGAGCTTGTTATTTTCTCAAAATTCCTCTACATGCTAATAATGTTTTCACCTTTGTGGCTACTTTAAGGCTTGTTCAAGATCCGGTTAGGTCTATCCCGGATGTCATTGGAGTGGTTATTCAAGCGAATGTTTCTTTTTCGAGGATCGTGAAGTTCCTTGAGGCATCGGAATTAGAAACCGCAAATGTTAGGCGAAAGGATGATATGGATAATGTGAATGAGGTTATTCGTATTAAGTCAGCTAGTTTTTCATGGGAAGAGAATTCTTCAAAGGCAACGCTTCGAAATATTGATTTAGAGGTTCGACGAGGGGAGAAGGTGGCTATTTGCGGAGAAGTTGGCTCCGGAAAGTCAACTTTGCTGGCAGCAATTCTCGGAGAAGTTCCCAATGTTCTTGGAAATATTCAAGTTTACGGGAGGATTGCTTATGTGTCTCAAACAGCATGGATTCAAACAGGAACAATACAAGAGAATATTTTATTCGGGTCGGAGATGGATAGTCGAAGGTACCGAGAAACACTGGAAAGGTGTTCTTTGGTAAAGGACCTCGAGCTGTTTCCTTATGGCGATCAAACCGAAATAGGTGAGAGAGGAGTTAATCTAAGTGGTGGTCAAAAGCAACGAATTCAACTCGCCCGTGCTCTTTATCAGAATGCTGATATATATCTCTTAGATGATCCGTTCAGCGCTGTTGATGCACATACTGCTTCGAGTTTATTCAATGAGTATGTAATGGAAGCACTTTTGGGGAAGACTGTTCTGCTCGTGACTCATCAAGTCGATTTCCTTCCTGCATTTGATTCTGTTCTGTTAATGTCAGATGGGGACATTCTAGAAGCAGCTTCTTACCACAATCTATTAGCATCAAGCAAAGAATTTCAGGACCTTGTGAATGCACACAAAGAGACAGCGGGGTCTGAAAGGATAGCAGATGTTGCTATTACACGAAAAAGTCAACCCGCTTCTCCTAAGGAGATTCGGAAAACTTATGTAGAGAAAATAAACAAAGCATCGAAGAAAGGCGATCAGTTGATTAAACAAGAGGAGAAAGAAATCGGAGACACGGGATTCAGGCCATACATTCAGTATCTGAATCAGAACAAAGGGTTCTTGTACTTCTCAATTGCCAGTATGTCTCATCTTGCATTTGTCACTTGCCAGATTCTGCAAAACACTTGGATGGCTTCGAGTGTTGAGAATCCGGACATTAGTACATTGAAATTAATCGTGGTTTACTTGTTGATCGGAGTCCTTTCGACATTTTTCTTGTTATCTAGATCGCTTTCTGCGGTTACTTTGGGGCTTAGATCATCAAAATCGTTATTTTCTCAGCTATTCACCTCCCTTTTCCGTGCACCGATGTCCTTCTACGACTCCACACCTCTTGGCAGAATACTTAGCCGAGTCTCGTCGGATTTGAGTATTGTTGATCTAGACGTACCTTTCAGTTTCATCTTTGCAGTTGGTGCGACCACAAACGCTTATGCTAGTCTCGGAGTGTTAGCCGTTGTTACATGGCAAGTGCTTTTTGTCTCCATTCCCATGGTTTTCCTCGCAATTCGGTTACAGAGATACTATTTCTCATCTGCAAAAGAATTGATGCGAATTAATGGCACGACCAAGTCGTTGATTGCAAATCATGTAGCCGAGTCTGTAGCCGGATCAATGACGATAAGAGCCTTTCAAGAAGAAGAGCGGTTCTTTGTAAAAACTCTCGATCTCATTGACACGAATGCTAGCCCTTTCTTTCATAGTTTTTCAGCAAATGAATGGTTGATCCAGCGGCTAGAAATGCTCAGTGCAACCGTTCTTGCCGCTGCTGCTCTTTGCATTGTTTTGCTTCCTCCCGGCACCTTTAGCTCCGGATTTATCGGAATGGCGATTTCTTATGGACTTTCGTTAAACATGTCGTTGGTATTTTCAATCCAAAACCAATGCACTCTGGCAAATTACATTATTTCTGTGGAAAGAGTAAACCAATACATGCATTTAACAAGTGAAGCACCGGAAGTAATAGAAGACAATCGTCCGCCGAGCAACTGGCCATCTATTGGCAAAGTGGAGATTCTCGACTTGCAGGTAAGATACAGGGCTAATGCCCCGCTTGTTCTTCGTGGAATAAGTTGCACCTTTGAAGGAGGACATAAGATTGGTATTGTGGGCCGGACTGGAAGCGGGAAAAGCACTCTCATCGGTGCTCTATTTCGACTAGTGGAACCTGCTGGAGGAAAGATCATAGTCGATGGGATCGATATCTCTACAATAGGCCTTCATGATCTACGGTCACGATTCGGAGTTATACCTCAAGATCCTACCCTTTTCAACGGAAGCGTCCGATACAATTTAGATCCCTTGTCCCAACACTCCGATCCCGAAATATGGGAGGTACTTGGAAAATGTCAGCTTTTAGAGGCTGTTCGGGAAAAAGAAGGATTATTGGACTCGTTGGTCGTGGAAGATGGTTCTAACTGGAGCATGGGTCAAAGGCAGTTATTCTGTTTAGGCCGAGCGTTATTGAGGAGAAGTAGAGTATTGGTTCTCGACGAAGCAACTGCATCGATCGATAATGCAACTGATATGATACTGCAGAAGACGATACGGTCGGAATTTGCTGATTGTACGGTTATTACAGTTGCTCATAGAGTACCAACTGTAATGGATTGTACTATGGTTCTTGCCATTAGTGATGGCAAAATGCTGGAGTATGATGAGCCCATGAAGTTGATGAAGACAGAAGGTTCGCTGTTTGGGCAGCTGGTTAAGGAATATTGGTCTCATTCTGATCAACTTCCCGAATCAATTTGA 4467 43.18 MRSEEKGMEDIWTLFCGDCSNNDGERPCRPSTFDFLFNPSSCITHALIICFDLILFIVLLFTIFHNSSTQNTLHLPTRFRSYSTLQILSGIFNACLGLTYSTLAVLYLSKIQTALPLHSWLPLLLHGLTWFFMSLITSIRGKRFTRSSLRLFSIIAFVFTALVCALSLSGSISSKVVSMKTALDVLSFPGATLLLFCTYRRFEHEGDDHEGVNGNDLYTPLTSEANGITKTNAVTPFSKAGFFAKMSFWWLNSLMKRGRQKTLEDEDIPKLREAERAGTCYLQFVQQLNNHKLTQPNSQPSILKTIILCHGKEIFVSGFFALLKILTVSAGPLLLNAFILVAEGNKSFKNEGYLLVITLFLSKSIESLSQRQWYFRSRLIGLKVRSLLTAAIYKKQLRLSSAARLVHSGGEVMNYVTVDAYRIGEFPFWFHQTWTTSLQLCIALVILFRAVGLATVAALVVIILCVLCNTPLAKLQHKFQTKLMETQDARLKACTESLVNMKVLKLYAWEKHFKNVIESLRRQEYKWLSAVQIRKAYNGFLFWSSPVLVSAATFGACYFLKIPLHANNVFTFVATLRLVQDPVRSIPDVIGVVIQANVSFSRIVKFLEASELETANVRRKDDMDNVNEVIRIKSASFSWEENSSKATLRNIDLEVRRGEKVAICGEVGSGKSTLLAAILGEVPNVLGNIQVYGRIAYVSQTAWIQTGTIQENILFGSEMDSRRYRETLERCSLVKDLELFPYGDQTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTASSLFNEYVMEALLGKTVLLVTHQVDFLPAFDSVLLMSDGDILEAASYHNLLASSKEFQDLVNAHKETAGSERIADVAITRKSQPASPKEIRKTYVEKINKASKKGDQLIKQEEKEIGDTGFRPYIQYLNQNKGFLYFSIASMSHLAFVTCQILQNTWMASSVENPDISTLKLIVVYLLIGVLSTFFLLSRSLSAVTLGLRSSKSLFSQLFTSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFSFIFAVGATTNAYASLGVLAVVTWQVLFVSIPMVFLAIRLQRYYFSSAKELMRINGTTKSLIANHVAESVAGSMTIRAFQEEERFFVKTLDLIDTNASPFFHSFSANEWLIQRLEMLSATVLAAAALCIVLLPPGTFSSGFIGMAISYGLSLNMSLVFSIQNQCTLANYIISVERVNQYMHLTSEAPEVIEDNRPPSNWPSIGKVEILDLQVRYRANAPLVLRGISCTFEGGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKIIVDGIDISTIGLHDLRSRFGVIPQDPTLFNGSVRYNLDPLSQHSDPEIWEVLGKCQLLEAVREKEGLLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRVLVLDEATASIDNATDMILQKTIRSEFADCTVITVAHRVPTVMDCTMVLAISDGKMLEYDEPMKLMKTEGSLFGQLVKEYWSHSDQLPESI 1488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54766348 54771526 - Conep01aG0099500.1 Cone1ag0952 431643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0952 1488 SUPERFAMILY ABC transporter transmembrane region 924 1224 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone1ag0952 1488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 625 853 IPR027417 -
Cone1ag0952 1488 FunFam ABC transporter C family member 3 1224 1476 - -
Cone1ag0952 1488 Pfam ABC transporter 1258 1406 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone1ag0952 1488 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 225 1476 IPR050173 GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Cone1ag0952 1488 ProSitePatterns ABC transporters family signature. 755 769 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone1ag0952 1488 FunFam ABC transporter C family member 10 614 866 - -
Cone1ag0952 1488 FunFam ABC transporter C family member 5 890 1222 - -
Cone1ag0952 1488 CDD ABCC_MRP_domain2 1239 1459 - -
Cone1ag0952 1488 CDD ABCC_MRP_domain1 630 829 - -
Cone1ag0952 1488 CDD ABC_6TM_ABCC_D1 316 603 IPR044746 GO:0140359(InterPro)
Cone1ag0952 1488 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 935 1204 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone1ag0952 1488 Pfam ABC transporter transmembrane region 314 582 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone1ag0952 1488 Pfam ABC transporter transmembrane region 941 1186 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone1ag0952 1488 FunFam ABC transporter C family member 10 298 611 - -
Cone1ag0952 1488 Gene3D - 1224 1476 IPR027417 -
Cone1ag0952 1488 Gene3D ABC transporter type 1, transmembrane domain 888 1222 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone1ag0952 1488 Gene3D ABC transporter type 1, transmembrane domain 286 611 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone1ag0952 1488 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1241 1475 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone1ag0952 1488 Gene3D - 624 859 IPR027417 -
Cone1ag0952 1488 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 630 853 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone1ag0952 1488 SMART AAA_5 657 830 IPR003593 GO:0016887(InterPro)
Cone1ag0952 1488 SMART AAA_5 1267 1464 IPR003593 GO:0016887(InterPro)
Cone1ag0952 1488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1231 1468 IPR027417 -
Cone1ag0952 1488 SUPERFAMILY ABC transporter transmembrane region 306 613 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone1ag0952 1488 CDD ABC_6TM_ABCC_D2 923 1216 IPR044726 GO:0140359(InterPro)
Cone1ag0952 1488 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 315 595 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone1ag0952 1488 Pfam ABC transporter 648 782 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0952 K05666 - - rcu:8277053 2172.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0952 Cone-Chr1:54766348 Cone9ag0020 Cone-Chr9:104129 0 dispersed
Cone17ag0112 Cone-Chr17:594551 Cone1ag0952 Cone-Chr1:54766348 0 transposed
Cone1ag0952 Cone-Chr1:54766348 Cone5ag0661 Cone-Chr5:2821233 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g846 . . . Bda07g01915 Bpe03g00167 . . . Cmo16g00086 Cmo18g01320 . . . . . . Cpe14g00066 Bhi01g01434 . . . Hepe07g0101 Mch10g0103 . . . . . . . . Cone1ag0952 Cone5ag0661 . . Lsi05g01169 . . Cme06g01064 . Blo09g00046 . . . . . . . . . Cma16g00082 Cma18g01291 Car16g00072 Car18g01208 Cpe09g00051 . . . . . . . . Cla05g00937 Cam05g1026 Cec05g1030 Cco05g1026 Clacu05g1015 Cmu05g0968 Cre05g1049 . Csa03g02180 Chy06g01273 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48