Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0958 ATGGGTGATTCGTTTTTAGAGATTTTCGACGAACTCATAGAAGATGATGAGGATCTTTTTAGTATTTTCGATAGACTAGAAGGCGTAGGAGCAGATGATATGCTCAACATGTCAGCTAGTACCTTATTATCTTCATGTCATGATGCTAATTTGAAACATCAGACCGAATTAGAAACAGTAGTAGCGCCAAAAAGCAAGAGGTTGAGGCTTTCTTGTAATAATAGCAATAATATTGGTAATAATTCAGATGATCAGGAAGCTGCGAACCGGACAGATGGGAAACAAACTAGGATGTCTCATATCACGGTGGAGCGCAACCGCCGGAAGCAAATGAACGACCATTTATCCGTCTTGAGGTCCCTTATGCCTTCTTTCTATGTCAAAAGGGGAGATCAAGCATCGATAATTGGAGGGGTGGTAGATTACATTAACGAATTGCAACAAGTTCTACAATCACTAGAAGCCAAGAAGCAACGAAAAGCTTATAGCGAAGTGTTAAGCCCTAGAGTGCCCGTTTCAAGCCCAAGACTACCTTCACCACTTAGTCCTAGAAAACCGGCTAATAACATATTAAGCCCTAGACTTAACCTACGTCCTCTTAGTCCAAGAACACCACAACCCACTAGCCCTTACAATGACAGACCACTAAACTTGCAACAATCAGCTGGTAACTATAACCTCTCTCCTACCGCCTCCGTGGTCAACTCATCATCACTTGAACCATCCCCATCTCCTTCTTCAACAGCCTCCAATATTATTGTTAATGATCATAATTATGCCAATGAGTTCGTCGCCAATTCGAAATCGGACAGAGCTGAAGTCGAGGTCAAGTTTACGGGCCCTAACGTGGTTCTGAAGACAGTCTCTCCTCGGATTCCAGGTCTCGCCATGAAAATTGTTTCTACCATTGAAGACCTCTCGCTTGAAATTCTCCATGTGGATATTAACACTGCCGAGGAAACCATGCTCAACTCCTTCACCATCAAAGTGGGAATTGAATGCCAACTTAGTGCAGAAGAACTCGCTCAGCTGATTCAGCAAACGTTGTGTTAA 1053 42.92 MGDSFLEIFDELIEDDEDLFSIFDRLEGVGADDMLNMSASTLLSSCHDANLKHQTELETVVAPKSKRLRLSCNNSNNIGNNSDDQEAANRTDGKQTRMSHITVERNRRKQMNDHLSVLRSLMPSFYVKRGDQASIIGGVVDYINELQQVLQSLEAKKQRKAYSEVLSPRVPVSSPRLPSPLSPRKPANNILSPRLNLRPLSPRTPQPTSPYNDRPLNLQQSAGNYNLSPTASVVNSSSLEPSPSPSSTASNIIVNDHNYANEFVANSKSDRAEVEVKFTGPNVVLKTVSPRIPGLAMKIVSTIEDLSLEILHVDINTAEETMLNSFTIKVGIECQLSAEELAQLIQQTLC 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54816641 54817880 + Conep01aG0100300.1 Cone1ag0958 431649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0958 350 PANTHER TRANSCRIPTION FACTOR FAMA 16 349 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Cone1ag0958 350 MobiDBLite consensus disorder prediction 163 250 - -
Cone1ag0958 350 MobiDBLite consensus disorder prediction 72 99 - -
Cone1ag0958 350 Coils Coil 139 159 - -
Cone1ag0958 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 163 IPR036638 GO:0046983(InterPro)
Cone1ag0958 350 Pfam Helix-loop-helix DNA-binding domain 97 147 IPR011598 GO:0046983(InterPro)
Cone1ag0958 350 FunFam Transcription factor SPEECHLESS 86 161 - -
Cone1ag0958 350 Gene3D - 83 161 IPR036638 GO:0046983(InterPro)
Cone1ag0958 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 146 IPR011598 GO:0046983(InterPro)
Cone1ag0958 350 SMART finulus 101 152 IPR011598 GO:0046983(InterPro)
Cone1ag0958 350 MobiDBLite consensus disorder prediction 210 250 - -
Cone1ag0958 350 CDD bHLH_AtFAMA_like 98 171 - -
Cone1ag0958 350 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0958 Cone-Chr1:54816641 Cone4ag0399 Cone-Chr4:1815296 1.11E-36 dispersed
Cone1ag0958 Cone-Chr1:54816641 Cone14ag0031 Cone-Chr14:240995 4.51E-86 wgd
Cone1ag0958 Cone-Chr1:54816641 Cone5ag0651 Cone-Chr5:2784451 5.81E-202 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45478 PF00076 RRM_1 3.00E-05 CL0221 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0958 K20558 - rcu:8274388 323.553