Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0964 ATGGTATCCAGCAGTATCTTAAGAAGTGCAATTTCTCAAGCCGGACCTATAGGAATATTCTTCAAAAGACGGGTTCATTTCAGCAATATATTGAGGAGCTTGCCTGCAGGTCTAGGCTTAACATACTGGTATAAACGTGAATTCAAGACAAGTTTAAGGATGATGGTTGATTCAGGCTCGACTGTAAAAGGTAGTGCTATAACGGATATTTTGACAGAGAAAAGTGAGTGCAGTGGATATTCCAGTGGCGGATGGAAAAGTGAAAATGCAAAACTTAGCTGCGGGTTTTCAAGTTTTAGAGGGAAGAGACCGACCATGGAGGATTTTTATGATATTAAAATGTCTGAGATTGATGGACAAAGAGTCTGCCTGTTTGGCATATTTGATGGTCATGGTGGATCTCGTGCTGCTGAGTATTTGAAGGAGCGTCTATTTGAGAACCTCATGAAACATCCACAGTTTATGACAGACACTAAATTAGCGATCAGTGAAACATATCGACAGACGGATACTGAATTTTTGGATTCTGATAAAACCAGTTACCGAGATGATGGCTCTACTGCTTCTACGGCAGTGTTGGTTGGTAATCATTTATATGTTGCCAATGTTGGAGATTCACGAACAGTGATATCAAAGAGTGGCAAAGCAATCCCTCTTTCCGAGGATCATAAACCAAATAGGAGTGATGAGCGGAAGAGAATTGAAAATGCAGGGGGTATTGTGATGTGGGCAGGCACTTGGAGGGTTGGAGGCATCCTAGCTATGTCTCGGGCTTTTGGTAACCGGATGCTCAAGCAATTTGTTGTGGCAGAGCCAGAGATTAAGGAGCAAGAGATAGATGAAGAGTTTGAGTTGCTTGTTCTTGCAAGTGATGGACTCTGGGATGCTGTAAACAATGAGGATGCAATATCACTCGCTAGAACAGAGGAAGGTCCCGAGGCTGCAGCTCGGAAGCTAACTGAAGCTGCATTTACACGTGGCAGTGGTGACAACATAACCTGTGTTGTTGTGAGGTTTCACCACCACGACAACAAAGTCGACCCCCCCTCCCATCCCTCAGAATCACAAGAAAGTTAA 1077 43.55 MVSSSILRSAISQAGPIGIFFKRRVHFSNILRSLPAGLGLTYWYKREFKTSLRMMVDSGSTVKGSAITDILTEKSECSGYSSGGWKSENAKLSCGFSSFRGKRPTMEDFYDIKMSEIDGQRVCLFGIFDGHGGSRAAEYLKERLFENLMKHPQFMTDTKLAISETYRQTDTEFLDSDKTSYRDDGSTASTAVLVGNHLYVANVGDSRTVISKSGKAIPLSEDHKPNRSDERKRIENAGGIVMWAGTWRVGGILAMSRAFGNRMLKQFVVAEPEIKEQEIDEEFELLVLASDGLWDAVNNEDAISLARTEEGPEAAARKLTEAAFTRGSGDNITCVVVRFHHHDNKVDPPSHPSESQES 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54855567 54858857 - Conep01aG0100900.1 Cone1ag0964 431655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0964 358 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169(InterPro)
Cone1ag0964 358 ProSiteProfiles PPM-type phosphatase domain profile. 93 339 IPR001932 -
Cone1ag0964 358 PANTHER PROTEIN PHOSPHATASE 85 338 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone1ag0964 358 SMART PP2C_SIG_2 81 339 IPR001932 -
Cone1ag0964 358 SUPERFAMILY PP2C-like 87 341 IPR036457 -
Cone1ag0964 358 Gene3D - 84 346 IPR036457 -
Cone1ag0964 358 CDD PP2Cc 93 339 IPR001932 -
Cone1ag0964 358 FunFam Probable protein phosphatase 2C 76 85 345 - -
Cone1ag0964 358 Pfam Protein phosphatase 2C 94 332 IPR001932 -
Cone1ag0964 358 SMART PP2C_4 83 337 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0964 Cone-Chr1:54855567 Cone7ag1486 Cone-Chr7:10425499 1.38E-114 dispersed
Cone1ag0964 Cone-Chr1:54855567 Cone14ag0026 Cone-Chr14:216001 6.94E-76 wgd
Cone1ag0964 Cone-Chr1:54855567 Cone15ag0028 Cone-Chr15:207232 1.92E-182 wgd
Cone1ag0964 Cone-Chr1:54855567 Cone5ag0671 Cone-Chr5:2870663 1.14E-234 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0964 K17506 - vvi:100262129 518.079