Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0966 ATGTGCCAGCTCACTCTGATCAAAACCAAGAATGATTCTGGCCGGAACAGGAGAGTCAAAGTAAGGAGAGTAAGGTACGCTTGGCAAAATAAGGTACTCTCTTCTAGTACCATTAAGACCGTTGATGGTAGTAATGGTGAAGAACAGATAGTATTAGACGATCACAAATCTGATTATAGGTTTGATGATCGAGCTGATGTGCATGTGTCAGCCGAAAACGGGAAAGAAATCAACAGTTGTGAATGTGTATGTGGATCGTACGGTGCAGTTTCGATCATCGGACGGAGGAAAGAGATGGAAGATGAGGTGAGTGTTGAATTAGGGCTTATGAGGAAGGGTGTGGCCAGATATGACTTTTTTGGTGTTTACGACGGGCATGGCGGGGTCCAGGTTGCTCGGGCGTGCCGGGAGAGGTTACATCAAGTATTGGTGGAGGAGTTGGATCATGATGGAGGGAGTAGGTTTGAGATTGAGTGGGAGAAGGTGATGCAGAGATGTTTTAACAAGATGGATGAGGAGATAATCAACGGTGGAGATGTGGCGTGCAGGACGGTGGGATCTACGGTGGTGGTTGCGGTGGTAGGAGCGGAGGAGTTCGTGGTGGCGAACTGTGGAGATTGTAGGGCGGTCTTGGCCCGGGATGGGATTGCTACGGCCTTGTCCAATGACCATAAGCCACGTGACAACAATGATGAGCTGAAGAGAATCGAAGCAGCTGGAGGTCGGGTAATCAACTGGAACGGCTTCCGTGTCCTTGGAGTTCTTGCCACTTCCAGATCTATAGGCGATGAATATCTGAAACCGTATGTAATATCGAAGCCAGAAGTGAGGGTGACGAAGCGAACAGACAGTGATGAGTTTATGATTCTGGGCAGTGATGGGTTATGGGACGTGGTCTCAAATGAAGCTGCATGTCATATTGTGAGGAGATGCCTTCAGTATAAGGATCGTCTTGTTGGTCAAACGGTCAACCGGACCAGCCCTACTAGTAAGGCTGCATCAGTCCTGGTCAACCTAGCACTAGCCCGAGGTAGCTCTGACAACATTAGTGTCATTGTAGTAGATCTCAAGAGACCCACCACCGTCTCTTGA 1092 48.72 MCQLTLIKTKNDSGRNRRVKVRRVRYAWQNKVLSSSTIKTVDGSNGEEQIVLDDHKSDYRFDDRADVHVSAENGKEINSCECVCGSYGAVSIIGRRKEMEDEVSVELGLMRKGVARYDFFGVYDGHGGVQVARACRERLHQVLVEELDHDGGSRFEIEWEKVMQRCFNKMDEEIINGGDVACRTVGSTVVVAVVGAEEFVVANCGDCRAVLARDGIATALSNDHKPRDNNDELKRIEAAGGRVINWNGFRVLGVLATSRSIGDEYLKPYVISKPEVRVTKRTDSDEFMILGSDGLWDVVSNEAACHIVRRCLQYKDRLVGQTVNRTSPTSKAASVLVNLALARGSSDNISVIVVDLKRPTTVS 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54864311 54866387 - Conep01aG0101100.1 Cone1ag0966 431657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0966 363 ProSitePatterns PPM-type phosphatase domain signature. 119 127 IPR000222 GO:0043169(InterPro)
Cone1ag0966 363 FunFam Protein phosphatase 2C 51 79 363 - -
Cone1ag0966 363 Pfam Protein phosphatase 2C 87 349 IPR001932 -
Cone1ag0966 363 Gene3D - 80 361 IPR036457 -
Cone1ag0966 363 PANTHER PROTEIN PHOSPHATASE 68 355 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone1ag0966 363 SUPERFAMILY PP2C-like 83 357 IPR036457 -
Cone1ag0966 363 ProSiteProfiles PPM-type phosphatase domain profile. 86 356 IPR001932 -
Cone1ag0966 363 CDD PP2Cc 86 356 IPR001932 -
Cone1ag0966 363 SMART PP2C_4 70 354 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0966 Cone-Chr1:54864311 Cone9ag0849 Cone-Chr9:4151370 2.35E-92 dispersed
Cone1ag0966 Cone-Chr1:54864311 Cone5ag0672 Cone-Chr5:2877495 2.56E-210 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0966 K14497 - csv:101214188 345.895