Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0972 ATGGTTATTGGGCTTAATTCTGTAATCACTCTATCCCTATTATTGGTCATGGCTCATCTATTAGTACCTTGTGCATGTGAAAAAGACGAATGCATATCAAGGTGTGGCAAACATGGCCCTCTCATTAAATTTCCTTTTCGGCTAAAGGACACCCGCCATGAACACTGCGGCTTCACAGGTTTTGATGTTTCCTGCCTTAATAAGCATCACACAGCTCTAGTACTATCAAATTCAGTAAAATTCTTCGTCAAAAACATAGACTACAAGTATCAAACACTTGAAGTCTATGACCCACAAAACTGCCTTCCAGGACAGATACTAAACTTTCTCAATTCATCATCTTCTATATTCCAATTTCCAGAAAACTCGTTTCCGGGACTTAGTAATTTCAGCTTCTTCAACTGTTCTTGGTCAATAGAAAGACAAAATTCCTACTATAATATTCCATGCCTTAGTGGCCCTACTTACCAAATACTTGCTCTGGATGATGATGCGCCAGTTGGAGATTCATCCCTTGTGGATTGTACCAAGATTTATTATATCAATTCATCTGCTCCATATGCTATAAGAGGCCATTACAATACACTTCTTCTAAGCTGGTCCAAACCAAATTGTTCAAGCTGTGAAGCCAAGGGAGAGAGATGTGGACTGAAGAACAGTGGTATTGAGGGTGACACAGAATGTCTCCCCCTGCCCAAGATCAATAAAGGTGCACATAGAAGGGTACAAGAAGAAGTATCGGGTATAGTCATAGGTACCTTAGTCCTTGTAGGAGTTTTGGGTGCATTATATCTCACATATAGAACTGACAAAGCGGATAAACAAAATAAAGTAAGGATCAAAATGTTTTTGGAAGAATATAAAGCTCTCAAGCCCACTAGATATTCCTATGTTGATATCAAAAGGATTACAAATCAATTTAAGGACAAGTTAGGCCAAGGAGCTTATGGCACTGTGTATAAAGGAAAGCTTTCTGATGAAGTTCAAGTAGCTGTAAAGATTCTCAATAATTCCAAAGATAATGGTGAAGAGTTTATAAATGAAGTTGGAATAATTGGTAAAATCCACCACGTAAATGTGGTTCGCTTGGTCGGCTTTTGTGCTGACGGCTTCAGACGAGCTCTTATTTATGATTTCTTAGAAAATGGGTCATTGAAGGATTTTATATCCAAAGAGAATGATCAGACTAGTCACAATTCTTTGGGTTGGGAGAAGCTGCATGAAATAGTTCTTGGAATAGCTAAGGGAATTGAATATCTTCATCAAGGATGTGATCAAAGAATACTCCATTTTGATATCAAACCCCATAATATTCTTCTAGACCAAAACTTCACTCCAAAAGTCTCTGATTTTGGTCTAGCCAAGTTGTGTTCTAAGGATCAAAGTGTAGTGTCGATGACTACTGCAAGAGGAACAATGGGTTATATAGCTCCTGAAGTTTTTTCGAGGAACTTTGGCAGTGTTTCGTACAAGGCAGATGTGTATAGTTTCGGAATGTTATTACTCGAAATGGTTGGAGAAAAAAGGAACATAGATGTGATCCAAGAAGATTGTGGGCATGCTCTCAAAGAACCTTCAAGGTTTGAAAACAGGGAACTCTGTATTGATATTGGTAAAGAAGAAGATGATGGTGGTGCTAAAATTGCAAAGAAACTTGGGACTGTGGGGCTGTGGTGCATTCAATGGCACCAAGTGGATCGTCCATCCATGAAGTTAGTCCTTCAAATGCTGGAAGGAGAAGATGATAATTTAACTCTCCCGCCTAATCTTTTTACCTCTACAAGCACATGCAAAACAAATATTAGCCGTCAAAACCAAAAGTTGGAAATCATTCCTGAAATAGACTGA 1848 38.58 MVIGLNSVITLSLLLVMAHLLVPCACEKDECISRCGKHGPLIKFPFRLKDTRHEHCGFTGFDVSCLNKHHTALVLSNSVKFFVKNIDYKYQTLEVYDPQNCLPGQILNFLNSSSSIFQFPENSFPGLSNFSFFNCSWSIERQNSYYNIPCLSGPTYQILALDDDAPVGDSSLVDCTKIYYINSSAPYAIRGHYNTLLLSWSKPNCSSCEAKGERCGLKNSGIEGDTECLPLPKINKGAHRRVQEEVSGIVIGTLVLVGVLGALYLTYRTDKADKQNKVRIKMFLEEYKALKPTRYSYVDIKRITNQFKDKLGQGAYGTVYKGKLSDEVQVAVKILNNSKDNGEEFINEVGIIGKIHHVNVVRLVGFCADGFRRALIYDFLENGSLKDFISKENDQTSHNSLGWEKLHEIVLGIAKGIEYLHQGCDQRILHFDIKPHNILLDQNFTPKVSDFGLAKLCSKDQSVVSMTTARGTMGYIAPEVFSRNFGSVSYKADVYSFGMLLLEMVGEKRNIDVIQEDCGHALKEPSRFENRELCIDIGKEEDDGGAKIAKKLGTVGLWCIQWHQVDRPSMKLVLQMLEGEDDNLTLPPNLFTSTSTCKTNISRQNQKLEIIPEID 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54878381 54881126 + Conep01aG0101700.1 Cone1ag0972 431663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0972 615 Pfam Protein kinase domain 307 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0972 615 SMART serkin_6 305 577 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0972 615 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524(InterPro)
Cone1ag0972 615 Gene3D Phosphorylase Kinase; domain 1 266 379 - -
Cone1ag0972 615 PANTHER RUST RESISTANCE KINASE LR10-RELATED 245 596 IPR045874 GO:0004672(InterPro)
Cone1ag0972 615 FunFam PR5-like receptor kinase 380 588 - -
Cone1ag0972 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0972 615 Pfam Wall-associated receptor kinase galacturonan-binding 31 97 IPR025287 GO:0030247(InterPro)
Cone1ag0972 615 Gene3D Transferase(Phosphotransferase) domain 1 380 586 - -
Cone1ag0972 615 FunFam serine/threonine-protein kinase PBS1-like 272 379 - -
Cone1ag0972 615 SUPERFAMILY Protein kinase-like (PK-like) 287 578 IPR011009 -
Cone1ag0972 615 ProSiteProfiles Protein kinase domain profile. 305 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0972 Cone-Chr1:54878381 Cone5ag0664 Cone-Chr5:2842273 2.24E-273 dispersed
Cone9ag1249 Cone-Chr9:9190995 Cone1ag0972 Cone-Chr1:54878381 3.05E-17 dispersed
Cone1ag0971 Cone-Chr1:54870379 Cone1ag0972 Cone-Chr1:54878381 3.95E-101 tandem
Cone1ag0972 Cone-Chr1:54878381 Cone1ag0973 Cone-Chr1:54881788 1.54E-102 tandem
Cone1ag0972 Cone-Chr1:54878381 Cone5ag0675 Cone-Chr5:2883943 8.66E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82491 PF10280 Med11 1.10E-13 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0972 - - - 0.0