Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0973 ATGGCCGACAGTTATGATCCGAAGAACATATCCTACAAAGACATTCATGACATGCTCACTTATGGGTTTGAGCTTTCATGGGCCCACCCTTGCGTTTTTTGTAGTGGACATAGTAGACACTACATTTTCAGGTTATTTTCATACTGCGGTAGAGTAAGTATTTGGAAGAAGATTTATTATTTTATACAGGGCTTTTGTTATTACTATTTTTTTGAAGTCTCCATAGGTGTGGTGATATTTTTTTCGGCTAAGCATGCACTTGGTACTGTATGCGTGATTGCATTTTTGGTCTACAAATGGAGAAGACGTCATTTGTCAATGTACAACAACATCGAAGAATACCTACAAAGTCAAAACAACCTGAACCCGATTAGGTACTCTTACTCGGATATAAAGAAGATGACTCGACGTTTCAAGCACAAGTTAGGAGAAGGAGGATTTGGCTCTGTATACAAAGGAACGCTTAGAAGTGGAAGTTTTGTAGCAGTCAAGATGTTGTCGAGCAAGTCTAAAGCTAATGGACAAGACTTTATCAATGAAGTTGCTACCATAGGCAGAATTTACCATGTTAATGTTGTCCAACTTATCGGCTTCTGTGTTGAAGGATCAAAGCGTGCTCTTGTTTACGACTTTATGCCTAATGGATCTCTTGATAAGTACATATTTGCTAGAGAAGGAAGTATCCCATTAAGCACAGAGAAGATGTTTGAAATTTCTCTTGGAATCGCTCGTGGGATTGAGTATCTGCATAGAGGGTGTGAAATGCAGATTTTGCATTTTGATATCAAGCCTCACAACATCCTTCTTGCTGAAAACTTTACTGCAAAAATTTCCGATTTTGGTCTAGCTAGATTGTATTCGGCAAAAGAAAGCATTGTGAATTTAACAGCAGCAAGAGGGACTATAGGTTATATGGCTCCTGAGCTATGCTACAAGAACATTGGAGGAGTGTCTTATAAAGCTGATGTCTATAGTTTCGGAACGTTGTTAATGGAAATGGCGGGAAAACGAAAGAATGTTAATGCACATGCAGAGCATTCGAGCCAAATATACTTCCCTTCATGGGCTTATGACCAATTGAGCAAAGGAAAAGATGTTGGAATTGAAGATGTCACAGAAGAGGAGATGGTATTAACGAAGAAAATGATGATAGTGGCATTGTGGTGTATACAAATGAAGCCTAGTGAGCGTCCTGCCATGAACAAAGTGTTAGAAATGCTTGAGGGTGAGCTTGAAAGCCTACAAATGCCTCCATACAAGCCTCTCGAATTTCCAAAAGAAACTCATCCAATGGAGATTCTCGGGGAAACCTCAAATCCCTCTTGTTCATCGATTCCATCCGATGATTGGTCCTCGGAATCCGTCAGTTTAATATTGAGTTCCAAATAA 1389 39.45 MADSYDPKNISYKDIHDMLTYGFELSWAHPCVFCSGHSRHYIFRLFSYCGRVSIWKKIYYFIQGFCYYYFFEVSIGVVIFFSAKHALGTVCVIAFLVYKWRRRHLSMYNNIEEYLQSQNNLNPIRYSYSDIKKMTRRFKHKLGEGGFGSVYKGTLRSGSFVAVKMLSSKSKANGQDFINEVATIGRIYHVNVVQLIGFCVEGSKRALVYDFMPNGSLDKYIFAREGSIPLSTEKMFEISLGIARGIEYLHRGCEMQILHFDIKPHNILLAENFTAKISDFGLARLYSAKESIVNLTAARGTIGYMAPELCYKNIGGVSYKADVYSFGTLLMEMAGKRKNVNAHAEHSSQIYFPSWAYDQLSKGKDVGIEDVTEEEMVLTKKMMIVALWCIQMKPSERPAMNKVLEMLEGELESLQMPPYKPLEFPKETHPMEILGETSNPSCSSIPSDDWSSESVSLILSSK 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54881788 54885391 - Conep01aG0101800.1 Cone1ag0973 431664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0973 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0973 462 Gene3D Transferase(Phosphotransferase) domain 1 212 423 - -
Cone1ag0973 462 FunFam PR5-like receptor kinase 212 419 - -
Cone1ag0973 462 ProSiteProfiles Protein kinase domain profile. 136 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0973 462 MobiDBLite consensus disorder prediction 434 462 - -
Cone1ag0973 462 Pfam Protein kinase domain 138 405 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0973 462 FunFam serine/threonine-protein kinase PBS1-like 106 211 - -
Cone1ag0973 462 Gene3D Phosphorylase Kinase; domain 1 109 211 - -
Cone1ag0973 462 MobiDBLite consensus disorder prediction 429 462 - -
Cone1ag0973 462 ProSitePatterns Protein kinases ATP-binding region signature. 142 164 IPR017441 GO:0005524(InterPro)
Cone1ag0973 462 PANTHER RUST RESISTANCE KINASE LR10-RELATED 99 426 IPR045874 GO:0004672(InterPro)
Cone1ag0973 462 SMART serkin_6 136 407 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0973 462 SUPERFAMILY Protein kinase-like (PK-like) 113 408 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0973 Cone-Chr1:54881788 Cone5ag0663 Cone-Chr5:2834063 4.28E-233 dispersed
Cone1ag0972 Cone-Chr1:54878381 Cone1ag0973 Cone-Chr1:54881788 1.54E-102 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82492 PF02786 CPSase_L_D2 1.90E-71 CL0179 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0973 - - - 0.0