Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0980 ATGGACTATGGGCGGCTTAAGGCATCAGAAACAGTAAGCTCATTCCGTTCCGACCAGCTAAACGACGTCGCTCCATCACAATCCCCACTTTCCCAAAAACGAAGGAAGAGGCTTATACTCTTTATCTCCATCCTTTCTCTCACATTGATCATCGTAGCTGCTGTCTCTGCCACTCTCCTCGTGGTCATTCGGACCCGGGCTTCCGGTCATCATGGGTTGAAATTAAAACCGAGCCAGGCTATCTCCAAGGCATGTAGCCGAACTCGGTATCCGGATCTCTGTGTCAACTCGCTGGTCGATTTTCCTGGCTCTCAAACTGCCAATGAGCACGATCTCCTCCACATTTCCTTTAACATGACCCTACTCCACTTTAGCGGAGCTCTCTACTCAACTTCTGAATTCTCCGCAGCCCAAATGGCTCCACGTGTACGGTCCGCATACGACGACTGCCTCGAGCTCTTGGACGATTCCGTCGATGCGCTCTCACGCTCGTTAAACGCAATCCTACCTCAGCAGTCCACCGTTTCCACACAAGACGTTCTGACGTGGCTCAGCGCAGCGCTCACCAATCAAGACACGTGTACGGAAGGATTCGATGAAGTAAGCGGGAGCATTAAGGATCAGGTGACCGACAAGCTACACAACTTATCGGAGATGGTTAGTAACTGTTTGGCTATCTTTTCCACGAGTACCACAGGCGATTTTTCTGGAGTGCCGATTCAGAACAGAAGAAGACTTCTAGAAGCCGACATATCCGAGTCAAATCCGGAAATATCGGGAGAGTTCCCGAAATGGTTGGGTAGGAGGGATAGACAGTTACTGAGCTTACCCGTATCGGCGATACAAGCCGATATAGTGGTGTCTCAGGATGGGAGTGGCGGAGCGTATAAGACGATATCGGAGGCGATAAAGAAAGCGCCCGAGAACGGGAATCACCGGACGATAATCTACATAAGGGCAGGAAGGTACAAAGAGACTAATTTGAAGGTGGGAAGGAAGAAGACCAATTTGATGTTCATCGGAGATGGGAAAGACAAAACCGTCATTTCAGGTGACAAGAGCGTCTACGATGACTTGACAACTTTTCACACCGCCACATTTGCGGCTAATGGAGCCGGGATAATTTTACGGGACATGACATTCGAGAACTCGGCCGGACCAAACAAGCACCAGGCTGTAGCTCTTCGTGTTGGAGCTGATCACGGTGTTGTCTATCGTTGCAGCATCGTTGGCTACCAAGACACATTATACGTGCACTCAAATCGCCAATTCTTCCGGGAATGTGACATTTACGGGACCGTGGATTTCATTTTTGGAAACGCAGCTGTCGTGTTCCAAAATTGCAACATTTATGCTCGGAAGCCCATGGCCAACCAAAAAAACACCATCACAGCTCAAAACCGTAAGGACCCAAATCAAAACACCGGCATCTCCATCCACGCCTGTCGCATCGTCGCCACATCGGATCTCGAGGCGTCCAAGGGGAGCTTCCCAACATACCTAGGTCGACCGTGGAAATTGTACTCCAGAGTGGTGTACATGTTATCATACATAGGTGATCATGTGGACCCACAAGGTTGGTTACCATGGAATGGAGGATTTGCCTTAGACACACTATACTATGGAGAGTACAAGAATAACGGCCCGGGCTCTGCAACTGGGCAAAGGGTTAAGTGGCCCGGGTATCAGGTTATCACATCCACTGTCGAGGCGAGTAAATTCACTGTTTCACAATTCATATATGGATCGTCATGGCTACCGTCGACCGGGGTGGCTTTCCTGGGAGGATTATCCGATTAA 1800 49.67 MDYGRLKASETVSSFRSDQLNDVAPSQSPLSQKRRKRLILFISILSLTLIIVAAVSATLLVVIRTRASGHHGLKLKPSQAISKACSRTRYPDLCVNSLVDFPGSQTANEHDLLHISFNMTLLHFSGALYSTSEFSAAQMAPRVRSAYDDCLELLDDSVDALSRSLNAILPQQSTVSTQDVLTWLSAALTNQDTCTEGFDEVSGSIKDQVTDKLHNLSEMVSNCLAIFSTSTTGDFSGVPIQNRRRLLEADISESNPEISGEFPKWLGRRDRQLLSLPVSAIQADIVVSQDGSGGAYKTISEAIKKAPENGNHRTIIYIRAGRYKETNLKVGRKKTNLMFIGDGKDKTVISGDKSVYDDLTTFHTATFAANGAGIILRDMTFENSAGPNKHQAVALRVGADHGVVYRCSIVGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNCNIYARKPMANQKNTITAQNRKDPNQNTGISIHACRIVATSDLEASKGSFPTYLGRPWKLYSRVVYMLSYIGDHVDPQGWLPWNGGFALDTLYYGEYKNNGPGSATGQRVKWPGYQVITSTVEASKFTVSQFIYGSSWLPSTGVAFLGGLSD 599
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 54911997 54914932 + Conep01aG0102500.1 Cone1ag0980 431671
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0980 599 ProSitePatterns Pectinesterase signature 2. 430 439 IPR033131 -
Cone1ag0980 599 Gene3D - 278 597 IPR012334 -
Cone1ag0980 599 Gene3D Invertase/pectin methylesterase inhibitor family protein 76 229 IPR035513 -
Cone1ag0980 599 Pfam Plant invertase/pectin methylesterase inhibitor 80 226 IPR006501 GO:0004857(InterPro)
Cone1ag0980 599 FunFam Pectinesterase 77 230 - -
Cone1ag0980 599 SUPERFAMILY Pectin lyase-like 279 595 IPR011050 -
Cone1ag0980 599 Pfam Pectinesterase 284 582 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone1ag0980 599 SMART PMEI_2 76 226 IPR006501 GO:0004857(InterPro)
Cone1ag0980 599 CDD PMEI-like_3 84 228 - -
Cone1ag0980 599 FunFam Pectinesterase 278 597 - -
Cone1ag0980 599 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 79 228 IPR035513 -
Cone1ag0980 599 NCBIfam pectinesterase inhibitor domain 56 228 IPR006501 GO:0004857(InterPro)
Cone1ag0980 599 PANTHER PECTINESTERASE 43 588 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0980 Cone-Chr1:54911997 Cone20ag0960 Cone-Chr20:6865051 5.78E-159 dispersed
Cone9ag0702 Cone-Chr9:3378795 Cone1ag0980 Cone-Chr1:54911997 6.00E-08 dispersed
Cone1ag0094 Cone-Chr1:472465 Cone1ag0980 Cone-Chr1:54911997 1.11E-137 transposed
Cone1ag0980 Cone-Chr1:54911997 Cone14ag0014 Cone-Chr14:112197 9.31E-295 wgd
Cone1ag0980 Cone-Chr1:54911997 Cone15ag0016 Cone-Chr15:125619 6.20E-292 wgd
Cone1ag0980 Cone-Chr1:54911997 Cone5ag0685 Cone-Chr5:2933931 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0980 - - - 0.0