Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0982 ATGGATTTGGATAGCGTGGAGTGCGTTTCATCAATAGATGGACTCGAAGAAGACGAGATCCATCACCATATGAACCCCCTTCATTCGCAGCATCCTCATCCTCATCATCATCCTGAGTTTTCAGCTTCGAAGTCTAGAAATGGCGGCAACAATGCCAATCTAACGGGTCCTACTGCCACTGCTCCTGCCACCAGCGTCCATGAGTTGCTGGAATGCCCCGTCTGCACCAATTCCATGTACCCGCCAATCCATCAGTGCCACAATGGGCATACACTTTGTTCCACCTGTAAAACAAGGGTACACAACCGCTGCCCAACTTGTCGACAAGAACTTGGAGACATTAGGTGCTTGGCCTTAGAAAAAGTGGCAGAATCACTTGAACTGCCTTGCAAATACTACTCCTTGGGTTGCCCTGAGATATTTCCATACTACAGCAAACTCAAGCATGAGGCAATGTGCAACTTCAGACCGTACAACTGCCCTTATGCTGGATCAGAGTGCTCTGTAGTTGGAGACATTCCTTTCCTTGTTCCCCATCTCAGAGATGACCACAAAGTAGACATGCACACTGGCTGCACGTTTAACCATCGCTATGTTAAGTCTAATCCTAGAGAAGTAGAGAATGCCACTTGGATGCTTACCGTTTTTCATTGTTTCGGGCAATATTTCTGCCTTCACTTTGAAGCCTTCCAGCTGGGCATGGCTCCTGTCTACATGGCATTTCTCCGTTTCATGGGCGATGAGAATGAGGCTCGAAATTACAGTTATAGCCTTGAGGTAGGTGGAAATGGACGGAAGTTAATATGGGAGGGGACCCCTCGAAGCGTTCGAGATAGTCATAGAAAGGTTAGGGACAGCCATGATGGGCTGATCATTCAAAGAAACATGGCACTTTTTTTCTCGGGCGGCGATAGGAAGGAACTGAAGCTGAGAGTTACCGGAAGAATATGGAAGGAACAGCAAAATCCAGATGGAGGTGTGTGCATACCAAACCTTTGTAGTTGA 1005 47.36 MDLDSVECVSSIDGLEEDEIHHHMNPLHSQHPHPHHHPEFSASKSRNGGNNANLTGPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEAMCNFRPYNCPYAGSECSVVGDIPFLVPHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGGNGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCS 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54923415 54925474 - Conep01aG0102700.1 Cone1ag0982 431673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0982 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 180 IPR013083 -
Cone1ag0982 334 FunFam E3 ubiquitin-protein ligase SINAT5-like 181 313 - -
Cone1ag0982 334 MobiDBLite consensus disorder prediction 25 60 - -
Cone1ag0982 334 ProSiteProfiles Zinc finger RING-type profile. 72 108 IPR001841 -
Cone1ag0982 334 Pfam Sina, zinc finger 121 196 - -
Cone1ag0982 334 SUPERFAMILY TRAF domain-like 125 317 - -
Cone1ag0982 334 SUPERFAMILY RING/U-box 60 112 - -
Cone1ag0982 334 MobiDBLite consensus disorder prediction 43 60 - -
Cone1ag0982 334 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 72 107 IPR049548 -
Cone1ag0982 334 ProSiteProfiles Zinc finger SIAH-type profile. 125 185 IPR013010 GO:0008270(InterPro)
Cone1ag0982 334 CDD RING-HC_SIAHs 70 108 - -
Cone1ag0982 334 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 181 313 IPR008974 GO:0005515(InterPro)
Cone1ag0982 334 CDD Sina 186 314 - -
Cone1ag0982 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 124 IPR013083 -
Cone1ag0982 334 FunFam E3 ubiquitin-protein ligase SINAT3 11 123 - -
Cone1ag0982 334 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 50 315 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cone1ag0982 334 MobiDBLite consensus disorder prediction 25 42 - -
Cone1ag0982 334 FunFam E3 ubiquitin-protein ligase SINAT3 124 180 - -
Cone1ag0982 334 Pfam Sina, TRAF-like domain 216 313 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0520 Cone-Chr13:5506266 Cone1ag0982 Cone-Chr1:54923415 8.31E-145 dispersed
Cone19ag0472 Cone-Chr19:3865754 Cone1ag0982 Cone-Chr1:54923415 1.25E-84 dispersed
Cone1ag0982 Cone-Chr1:54923415 Cone5ag0480 Cone-Chr5:2021704 2.03E-172 dispersed
Cone1ag0982 Cone-Chr1:54923415 Cone11ag0491 Cone-Chr11:2504830 1.69E-198 wgd
Cone1ag0982 Cone-Chr1:54923415 Cone14ag0012 Cone-Chr14:90430 4.33E-228 wgd
Cone1ag0982 Cone-Chr1:54923415 Cone15ag0013 Cone-Chr15:114500 6.00E-220 wgd
Cone1ag0982 Cone-Chr1:54923415 Cone18ag1014 Cone-Chr18:7508112 6.18E-201 wgd
Cone1ag0982 Cone-Chr1:54923415 Cone5ag0687 Cone-Chr5:2947117 1.06E-252 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0982 K04506 - mdm:103439869 642.114