Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0983 ATGGCTCGAAATGTCAAAATTGACGACCATAAGCGACCAGGAAACGAAGAAAATATCGGAAACAACGATGTGGGTCGGCTTGGAGGTGAAGAAATTCATAACTATTCCTATGGGGGTCCGAGTATAGGTGAAGAAATTGCACGCTTGTTTGGCGAAGTAATTGTAGAAGATCTTCCTCTGGATCTTCCCGGTGAAGGTATGAAGCTCTGGAATGGTGGTTTTGGTGGGGTTGCATGTGAAAACAGGGGTCAAAGTGTAGGTCTTTCTTTTGATACTAATTCTATTCCTCTATGGGCTGGGTCTGAAGGAAATTTCGGTGATGTTTCTCATGTGGGTAGCAGTGATTTTGAGCTTAATGGTGAGGGTCTTCGAGGTTTTTTTGGTGAAATCGGTCATGGGAATGGAGCTCTGAATCTTGTTAACGGAGGCGGTCAAGTTCAACTTCAACCCTTTTCTGGCCTTGATGTTAATAATGGTGAAAATGGGGGCTTGATTTTCAGTAATGTGTATAGGAATGAAGGTGAAATTGTTGGAAGCGGAGGAGTTGATAAAGAGGGTGGAGATGGTGATAGAGGAGGAGGAGTTGTTATAAGCAAGAAGCGGGGCCGACCAAAGGGGTCGAAGAATAAGAAGAAAGTCAATCAAGAAGAGAATGGTGAACCTAAGAAACGGAAGAAGGGGAAGAAAGATCTTGCAGGTCAAGCCAAAATGGGAGTAGTTAATGAATATGTAGGTGGCAATGCTGGTGAGGTGATTGCTTCGCCAACGAGTTTGGAGGTTGAGATTAGACCGAAGAAGAATATTGGTCGGCCAAAAGGCTCAAAGAACAAGAAAAAAAAGGCTGCACATCAAGAAAACAGTGGCTTGATTGATAAAAATGATATTACTGAAAATGGTGGTGATGATGGTAAGAATCTTCAGTTAATAAATTTGGGGGATGTGGCAGAGGAACTGTTCATTATTGAAGGAAATGACGTTAATGAGGGTGGAAATGAGATTTCCGTGCAGAAGAAAAGGCGAGGTAGACCAAAGGGTTCAATCGGTAACAAGAAAAGACTTGCAAGTGAAGACAATGGAGGTGAAGTCATAGGTTTTAATGAAGGCCAAAATATGACCGGCTTAGTGAAGAGAAAGCCTGGTCACCCAAAGGGTTGTACGACTAAGAAGAAAAGTGTAGGAGGTCAGGAAGAAGCCATAGGTGATGATGAAATTGGAAATGATATTGCTCTGTCTAAGCAAAAGCATGGTGAAAGAGGTTTGAAGAGTAGGAATAGAATATATGAAGGCAAAGAAGAGATTCATGGAGGGCACTCTGAAACTGAAGAAGATGTCGAGTCTTCGACAATGAAGGAGTTAAAGAATGAGTTGATTGGTCCTGTCGACTATGAAGAAGAGAAGACAGTGTCTGGTGAAAATGAAAAAGCATTTCTTCTAACCAATGAGATCAAAGAAGTATCAGATGAAGTCATGTGTCAAAATGGAAATGGTATTGAGATTTTCCCCCAAATAGAAGAAAAGAATGTAAGAGGGGAAGTAAAAGTAGTAGTCGGTGGAAATGATGCTGTTTTTGATAGAGCTTTGAATAAGATTTTAGCCCAGAAGCACAGTAAAATTGAATCTCTATTCAGTGTAAAAGAACTGATAGAGAATAGTTTGAATGACGTGGGTTTTCCAGAGAAGAAGGGGAAAGATTTTTGCACTACAGATATAAAATCTAGCGAGAAAATTCCGGTATCTGGAAATGGTCAGAAGAGACCAAGAGGGAGACCTAAAGTGTTTAATAACATGCAGACTGATTCTGATGATACAAGTACAAACAAGGAGCAGAGGAGTTTAAAATGCCATCAATGCTTAAAGCGTGATAGAGATGTTGTCATTTGTTCTAACTGTAAAAAGAAACGTTATTGCTATGACTGCCTTGTGAAGTGGTACCCTGCAATAAATAAAGAACATGCAGAGATTGCTTGTCCTTTTTGCCGGCTTATTTGCAATTGCAGAATCTGTCTCAAGGAGAGTTTGATTTTGAAGACTGAGAGTGAAGAAGCTGATGCAAGCACCAAATTGCAGAAGTTGCTTTACTTGCTTCACGAAACTTTGCCTCTGCTTAGGAATATTGAATGGGAACAAAAGTGTGAAGTAGATGTCGAATCAAGAATTCGGGGTATGGAATTTACTGAAACCAACATTCTAAGGGTTGTACTTGATGAAGACGATCGAGTATACTGTGACAACTGCAATACCTCCATCGTCAATTTTCATAGAAGCTGTCAGAATCTGGATTGTTCTTATGATCTTTGTCTCAGTTGCTGTCGTGAACTAAGAAATGGATGTCAAGCTGGAGGCAGAGAAGAGTCTTCCGGCCAACAAATTTCACAAATAGTTGACAATCAAGACACAGAAGATTCCCATGGCCCAGATCTCGAAAAAGGTAGAAACAATGGTGGATCTGACATCTTATCTAACACTCCTCCTTGGAGAGCCGAATTTGATGGTAGAATTCCATGCCCACCAAAATCATTAGGCGGTTGTGGTGATCATATGCTTGCTCTGAAACGGTTTTTGGAACCTAATTGTGTTAAAAATTTGATTAAGAGTGGAGAGGAACTTACTGAAAATTATCAGTCACCATTTCATGATTCTTCTCAAGAACGTTTGTTTTGCCAGCACATCAATTTTGAGAAAAGCATTGGTAAATTTTCCGAAGCAAGGAGGGCGGCTTATCGGGAAAACTGTCATGATAACTATCTGTATTGCCCAAATGCTGTTATCTTGGGAAACAAGGAAATGGAACATTTTCAAATGCATTGGAGGAGAGGCGAACCCGTTATAGTAAGGAATGTACTTGAAAAAGCAACAGGTTTGAGTTGGGAACCTATGGTTATGTGGAGGGCTTTTATGGGGGCTAAAAGAGTATTAAAAGAGGAAGCGGTTAGAGTTCGAGCCATTGATTGCTTAAATTGGTGTGAGGTTGAGGTGAACATCTTCCGGTTTTTCAAGGGGTACTTGGAGGGTCGTTCCTATAGAAATGGGTGGCCAGAGATTTTGAAGTTGAAGGATTGGCCGGCCTCAAATTCTTTTCAAGAGTGTTTGCCAAGGCATTTTTCCGAATTTGTATCTATGCTTCCCTTTTGTGAGTACACTAATCCAAAATCCGGTATTCTCAATCTTGCCACAAAGCTTCCTACTGTTTTGAAGCCCGACCTGGGACCCAAAACATACATTGCATATGGATTTTCAGAAGAGCTCCGTAGAGGCGATTCAGTCACAAAGCTCCATTGCGACATGTCTGATGCGGTCAATGTACTGATGCACTCTGCTGAAGTAGACATTAATCCCCGCCAATTTAAAATGATCATGAAATTACGGGACAAATATGAAGCTAAAGGTGTTGCTCATAAGGGTTGTGGAAGGGCGTTTGGCACATCTAAAAGAAAAAGACGGAAAAGCCGCCGTATGTACAAAACAAAGACTCTGGAACATTCTTACAAAGCTGAGATTGATTCAGCTAGAAATCTCCCAGAAATTACTGACCGTCCAAAGGTTGAATATGGAGATGCTGTTTGGGACATTTTCCGACGGGAAGACGTACCCAAGTTGAGCGAGTACTTGAAGAAGCACCATAAAGAATTCCTCCACTTCAATAACCTTCCCATAGATTTGGTTAATCACCCTATACATGACCAGACCTTATATCTAAACGAAAGGCATAAAAAGCAGCTAAAGGAAGAGTATGGTGTTGAACCATGGACTTTTGAGCAACACCTCGGTGAGGCTGTTTTTATACCGGCTGGATGCCCTCACCAAGTGAGGAACAGACGGTCATGCATTAAGGTTGCCCTCGACTTTGTTTCCCCGGAGAGTGTCCAAGAGTGTATTCAGTTGACAGAAGAGTTTCGCTTGCTTCCTAAAGGCCATAAATCCAAGGAAGATAAATTGGAGGTGAAGAAGATGGCTTTATATGCTGTAGACAGTGCAGTGAGTGAGGCGAAGAATCTCATGTCACAAATTGAGTAA 4014 41.28 MARNVKIDDHKRPGNEENIGNNDVGRLGGEEIHNYSYGGPSIGEEIARLFGEVIVEDLPLDLPGEGMKLWNGGFGGVACENRGQSVGLSFDTNSIPLWAGSEGNFGDVSHVGSSDFELNGEGLRGFFGEIGHGNGALNLVNGGGQVQLQPFSGLDVNNGENGGLIFSNVYRNEGEIVGSGGVDKEGGDGDRGGGVVISKKRGRPKGSKNKKKVNQEENGEPKKRKKGKKDLAGQAKMGVVNEYVGGNAGEVIASPTSLEVEIRPKKNIGRPKGSKNKKKKAAHQENSGLIDKNDITENGGDDGKNLQLINLGDVAEELFIIEGNDVNEGGNEISVQKKRRGRPKGSIGNKKRLASEDNGGEVIGFNEGQNMTGLVKRKPGHPKGCTTKKKSVGGQEEAIGDDEIGNDIALSKQKHGERGLKSRNRIYEGKEEIHGGHSETEEDVESSTMKELKNELIGPVDYEEEKTVSGENEKAFLLTNEIKEVSDEVMCQNGNGIEIFPQIEEKNVRGEVKVVVGGNDAVFDRALNKILAQKHSKIESLFSVKELIENSLNDVGFPEKKGKDFCTTDIKSSEKIPVSGNGQKRPRGRPKVFNNMQTDSDDTSTNKEQRSLKCHQCLKRDRDVVICSNCKKKRYCYDCLVKWYPAINKEHAEIACPFCRLICNCRICLKESLILKTESEEADASTKLQKLLYLLHETLPLLRNIEWEQKCEVDVESRIRGMEFTETNILRVVLDEDDRVYCDNCNTSIVNFHRSCQNLDCSYDLCLSCCRELRNGCQAGGREESSGQQISQIVDNQDTEDSHGPDLEKGRNNGGSDILSNTPPWRAEFDGRIPCPPKSLGGCGDHMLALKRFLEPNCVKNLIKSGEELTENYQSPFHDSSQERLFCQHINFEKSIGKFSEARRAAYRENCHDNYLYCPNAVILGNKEMEHFQMHWRRGEPVIVRNVLEKATGLSWEPMVMWRAFMGAKRVLKEEAVRVRAIDCLNWCEVEVNIFRFFKGYLEGRSYRNGWPEILKLKDWPASNSFQECLPRHFSEFVSMLPFCEYTNPKSGILNLATKLPTVLKPDLGPKTYIAYGFSEELRRGDSVTKLHCDMSDAVNVLMHSAEVDINPRQFKMIMKLRDKYEAKGVAHKGCGRAFGTSKRKRRKSRRMYKTKTLEHSYKAEIDSARNLPEITDRPKVEYGDAVWDIFRREDVPKLSEYLKKHHKEFLHFNNLPIDLVNHPIHDQTLYLNERHKKQLKEEYGVEPWTFEQHLGEAVFIPAGCPHQVRNRRSCIKVALDFVSPESVQECIQLTEEFRLLPKGHKSKEDKLEVKKMALYAVDSAVSEAKNLMSQIE 1337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54925645 54931568 - Conep01aG0102800.1 Cone1ag0983 431674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0983 1337 FunFam Transcription factor jumonji domain-containing protein 913 1308 - -
Cone1ag0983 1337 MobiDBLite consensus disorder prediction 179 234 - -
Cone1ag0983 1337 ProSiteProfiles Zinc finger RING-type profile. 614 660 IPR001841 -
Cone1ag0983 1337 SUPERFAMILY Clavaminate synthase-like 928 1331 - -
Cone1ag0983 1337 MobiDBLite consensus disorder prediction 796 821 - -
Cone1ag0983 1337 SMART cupin_9 1030 1299 IPR003347 -
Cone1ag0983 1337 MobiDBLite consensus disorder prediction 425 447 - -
Cone1ag0983 1337 SMART AT_hook_2 265 277 IPR017956 GO:0003677(InterPro)
Cone1ag0983 1337 SMART AT_hook_2 584 596 IPR017956 GO:0003677(InterPro)
Cone1ag0983 1337 SMART AT_hook_2 337 349 IPR017956 GO:0003677(InterPro)
Cone1ag0983 1337 SMART AT_hook_2 198 210 IPR017956 GO:0003677(InterPro)
Cone1ag0983 1337 MobiDBLite consensus disorder prediction 209 227 - -
Cone1ag0983 1337 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 208 1334 IPR045109 GO:0000118(PANTHER)|GO:0000785(PANTHER)|GO:0003712(PANTHER)|GO:0006357(PANTHER)|GO:0031490(PANTHER)|GO:0032454(InterPro)|GO:0032454(PANTHER)
Cone1ag0983 1337 MobiDBLite consensus disorder prediction 577 606 - -
Cone1ag0983 1337 MobiDBLite consensus disorder prediction 1 17 - -
Cone1ag0983 1337 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 608 680 IPR018866 -
Cone1ag0983 1337 Pfam JmjC domain, hydroxylase 1186 1282 IPR003347 -
Cone1ag0983 1337 Gene3D Cupin 916 1308 - -
Cone1ag0983 1337 ProSiteProfiles JmjC domain profile. 1049 1299 IPR003347 -
Cone1ag0983 1337 MobiDBLite consensus disorder prediction 329 394 - -
Cone1ag0983 1337 MobiDBLite consensus disorder prediction 1 25 - -
Cone1ag0983 1337 MobiDBLite consensus disorder prediction 262 300 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0983 K15601 - - mdm:103443682 1053.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0983 Cone-Chr1:54925645 Cone3ag0794 Cone-Chr3:4089301 1.82E-147 dispersed
Cone1ag0018 Cone-Chr1:141241 Cone1ag0983 Cone-Chr1:54925645 3.29E-207 transposed
Cone5ag0689 Cone-Chr5:2951621 Cone1ag0983 Cone-Chr1:54925645 1.28E-183 transposed
Cone5ag1026 Cone-Chr5:4466874 Cone1ag0983 Cone-Chr1:54925645 3.88E-215 transposed
Cone5ag1746 Cone-Chr5:12428433 Cone1ag0983 Cone-Chr1:54925645 2.00E-108 transposed
Cone1ag0983 Cone-Chr1:54925645 Cone11ag0494 Cone-Chr11:2518930 2.12E-215 wgd
Cone1ag0983 Cone-Chr1:54925645 Cone5ag0688 Cone-Chr5:2950639 2.99E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1040 . . . . . . . Bma14g02007 . . . . . . . . . . . . . . . . . . . . . . . Cone1ag0983 . . . . . . . . Blo09g00027 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004873 1 3 1 1 0 1 1 0 1 1 1 0 1 1 1 1 1 3 0 1 1 1 1 1 1 1 1 8 2 2 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45480 PF00009 GTP_EFTU 1.10E-53 CL0023 Cone TR