Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0986 ATGGAGTCTCTGCAAACAGTTCATGTATTTTCCTACAAGTCGTCTCTGAATCTGCATTTACAGAAAGCTGGTGGTGATTTCGGAGTGATCAGGCGAGTAGGTTTCGCTCCTCTGAGGAGAAGTAGACATCCTCGCGACTCGTTGAGGCTAAGTGGAGCGATTTCAAGTAGAAGAGAAGGTAGGGGCGTTGCTTCTGCTGTTGAATCTTCTTCAGCAGCTGAAGAACAGAGAAAGGAAGAAAAAGGTCTTATTTTGAGCACTGAGATAGATGATGCTGGCTCTGAAATCGGCTTTAATTTGATTCCTCGCTCTGGTGAAAATGATGCCAGCGACTCTCATGAAGTTGACACACCAGAAAAAGTAAAAGAAACTGAGGACCTAGGAAAAGATAAAATCCGGACAGCAGAAACATACAATATTGTTTTTGTAGCTGCCGAAGCAGCACCATACTCGAAGACAGGTGGCTTAGGAGATGTTTGTGGTTCTTTGCCTATAGCATTAGCTGCTCGTGGACACAGGGTCATGGTAATATCTCCTAGGTACCTAAATGGAACTGCTGCTGATGAGAAATTTTCTGGTGCATTCGATATGGATTGTCGCATCAATGTATCTTGCTTTGGAGGGTTGCAAGAAGTAGCCTTCTTCCATGAATACAGACAAGGTGTTGATTGGGTGTTTGTGGATCACACTTCATACCATAGGCCTGGAAACCCATATGGGGATGCTTATGGTGCTTTTGGTGACAATCAGTTTCGGTTTACTTTGCTCTGCCATGCAGCATGTGAAGCTCCATTGGTGCTTCCATTAGGAGGGTTCACCTATGGAGAAAAATGTTTGTTCCTGGTCAATGACTGGCATGCTAGCCTTGTGTCCGTACTTTTGGCAGCCAAGTATCGTCCATATGGAGTTTATAAGGATGCTCGGAGTATTCTTATAATACATAACCTTGCACATCAGGGTGTCGAACCTGCAGTGACATACAAGAATTTGGGACTACCGTCCGACTGGTATGGAGCCTTGGGATGGGTGTTTCCAGAGTGGGCACGAACACATGCTCTTGATACAGGTGAAGCTGTCAATGTTCTGAAGGGTGCAATTGTGACAGCTGACCGGATACTAACAGTTAGCAAGGGGTATTCCTGGGAGATAACAACTGTGGAAGGTGGTTATGGTCTTGACGAACTATTAAACAGTCGAAAGAGTGTTCTTACTGGGATTGTGAATGGCATAGATATTACTGACTGGGATCCCTCGGTGGATAAGCATATAGTGTCTCATTACTCAGCTGATGATCTTTCTGGAAAGGCTGAATGCAAGATTGCCCTGCAGAAGGAGTTAGGTCTTCCAATTAGGCCTGAATGCCCATTGATTGGTTTCATTGGACGACTGGACTACCAGAAAGGGATCAACTTGATTCAACAAGCTATGCCAGACCTCTTAATAGATGATGTACAATTCGTTATGCTGGGTTCTGGTGATTCAAAATATGAGGACTGGATGAGAGCAACAGAGGCAGCTTACAAAGAAAAGTTCCGTGGTTGGGTTGGATTTAATGTTCCAATTTCTCATAAAATAACTGCAGGCTGTGACATACTGTTGATGCCATCAATTTTTGAACCCTGTGGGCTAAATCAATTGTACGCAATGAGATATGGAACTGTCCCCGTGGTTCATCAAACTGGTGGACTTAGAGATACAGTAGAGAATTTCAATCCTTTTGCTCGAGAGGGCAGTGGTGAAGGTACAGGGTGGGCTTTTTTTCCATTAACAAAAGATAGTATGTTGGCGGCACTAAAATTAGCAATTGAGACTTACAGAGTGCATAAATCTTCTTGGGAGGGATTAATGAAAAGATGCATGGAGAAGGACTACACGTGGGAAAATTCTGCAGTTCAATATGAACAGGTCTTTCAATGGGCCTTCATCGATCCACCTTATATCAAGTAG 1947 43.81 MESLQTVHVFSYKSSLNLHLQKAGGDFGVIRRVGFAPLRRSRHPRDSLRLSGAISSRREGRGVASAVESSSAAEEQRKEEKGLILSTEIDDAGSEIGFNLIPRSGENDASDSHEVDTPEKVKETEDLGKDKIRTAETYNIVFVAAEAAPYSKTGGLGDVCGSLPIALAARGHRVMVISPRYLNGTAADEKFSGAFDMDCRINVSCFGGLQEVAFFHEYRQGVDWVFVDHTSYHRPGNPYGDAYGAFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKCLFLVNDWHASLVSVLLAAKYRPYGVYKDARSILIIHNLAHQGVEPAVTYKNLGLPSDWYGALGWVFPEWARTHALDTGEAVNVLKGAIVTADRILTVSKGYSWEITTVEGGYGLDELLNSRKSVLTGIVNGIDITDWDPSVDKHIVSHYSADDLSGKAECKIALQKELGLPIRPECPLIGFIGRLDYQKGINLIQQAMPDLLIDDVQFVMLGSGDSKYEDWMRATEAAYKEKFRGWVGFNVPISHKITAGCDILLMPSIFEPCGLNQLYAMRYGTVPVVHQTGGLRDTVENFNPFAREGSGEGTGWAFFPLTKDSMLAALKLAIETYRVHKSSWEGLMKRCMEKDYTWENSAVQYEQVFQWAFIDPPYIK 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54937975 54943972 + Conep01aG0103100.1 Cone1ag0986 431677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0986 648 Pfam Glycosyl transferases group 1 451 603 IPR001296 GO:0016757(InterPro)
Cone1ag0986 648 CDD GT5_Glycogen_synthase_DULL1-like 139 639 - -
Cone1ag0986 648 NCBIfam glycogen/starch synthase, ADP-glucose type 139 638 IPR011835 GO:0004373(InterPro)
Cone1ag0986 648 FunFam Starch synthase, chloroplastic/amyloplastic 139 423 - -
Cone1ag0986 648 Gene3D Glycogen Phosphorylase B; 412 623 - -
Cone1ag0986 648 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 109 647 - GO:0009507(PANTHER)
Cone1ag0986 648 MobiDBLite consensus disorder prediction 101 124 - -
Cone1ag0986 648 MobiDBLite consensus disorder prediction 107 124 - -
Cone1ag0986 648 Pfam Starch synthase catalytic domain 139 397 IPR013534 -
Cone1ag0986 648 Hamap Glycogen synthase [glgA]. 138 640 IPR011835 GO:0004373(InterPro)
Cone1ag0986 648 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 137 637 - -
Cone1ag0986 648 MobiDBLite consensus disorder prediction 59 82 - -
Cone1ag0986 648 Gene3D Glycogen Phosphorylase B; 158 637 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0986 K00703 - - cit:102630022 970.304
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0846 Cone-Chr16:9043113 Cone1ag0986 Cone-Chr1:54937975 2.84E-155 dispersed
Cone1ag0986 Cone-Chr1:54937975 Cone2ag0196 Cone-Chr2:1037200 2.71E-154 dispersed
Cone8ag0561 Cone-Chr8:4346564 Cone1ag0986 Cone-Chr1:54937975 5.56E-118 transposed
Cone1ag0986 Cone-Chr1:54937975 Cone5ag0692 Cone-Chr5:2959973 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1036 Blo06g01059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag0986 Cone5ag0692 . . . . . . . . . Bda15g00786 . Bpe12g00350 Bma08g00388 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016620 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 7