Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0995 ATGGATAGGTCTAGATCTAAGCGAAATTACTACTACGATCACCAGGATTATGACCAGGAGGCGGCGGTGGGTCGGACCCGGCCACGGTACAACCACCACTACCAGAACAATCCCCATCGCCACCGTGGCAGTGGAGCCCAGCAGCAGCAGCAGCAGCGACCCCCTAATAAACCGCAAGACAATAATCTTATGGTCACTACGAGTTATCGAATACTCTGCCATGACATTAAGGCCGGAGGAGTAATCGGCAAGTCAGGAACTATCATCAAGTCGATTAGGCAGCATACCGGCGCGTGGATCAACGTGCACGAGCTGATGCCCGGTGATGAGGAGAGGATCATTGAGATTTCCGACACTCGCCGGAGAGACCCGGACGGTAGAATGCCATCTTTCTCTCCTTCCCAGGAAGCTCTTCTCTTGATTCACGAAAGGATTTTAGAAAGTGATGTTGGTGCTAGTGGTGGGTTTTACGGCGGCGGTGGTGGTGGTGGTGGTGAGGAAGAGGATGACTACGGCGGAGTTAGAGGCGGTGGTGGCGGGAACAGAGTGGCGACGAGGCTGGTTGTGTCGAGAATGCATGTGGGTTGTTTGCTCGGAAAAGGAGGGAAGATAATTGAGCAAATGAGGATGGAGACTAAGACCCAGATTCGAATACTTCCTCGAGATCATAACTTACCTCGTTGCGTTTCTATGTCAGAGGAGATTGTTCAGATTGTAGGAGATGCGAATGCTGTAAAGAATGCTATAGTGATAATTTCATCGCGCTTGAGGGAGAGTCAGCATCGAGACCGGTCCCACGGAAATCCACGTCAGCATTCTCCGGAACGGTTTTTCCCTCCTGACGATGATTACATTCCACATGTCAGCAATCCACAACAACGCCGTGGCCCCATAGACGGTCCCGCATTCAGATCCCGAATGTCTTCTACGCATAATGCTAGAAACAATAACTACAGTCCTCGCCCCTCTGGTTTCCCATTTGATTCTGGGGCCGCTCCCATGGTTGAAGAATATCAACCATATTATAATGAGGACCTTGTGTTTAAAATACTTTGTCCAGTTGAAAAAGTTGATAGTGTTGTTGGAGAATCGGATGGTATAATCGAATTGTTACAAAACGATATCGGTGTTGATGTTAAGGTTTCTGAACCTATTTCCAGTTCTGAAGAGCAGATTATCATTGTTTCCTCTGGAGAGGGTCCAGATGATGAGCTTTTTCCGGCTCAAGAAGCATTATTGCACATCCAAAGTCGAATTGTGAATCTTAGTCCGGATAAGGATAATATTATAACTACTAGGTTGCTTGTCCCATCTAGTGATATTGGATGTTTAGAGGGAAGAGACGGGTCATTATCCGAGATGAAGAGGTTAACAGGTGCAAATGTACTAATTCTTCCTAGAGAAGAGCTTCCTGCTTGTGTTTCCGGAAACGATGAGCTTGTTCAGATTGTAGGGGAGATAAGAGCAGCTAGAGAAGCTCTTGTTGAGGTGACATATCGATTAAGAAGTTATCTATATAGGGAGCTTTCTTCTCAACAGGATAATCTGACTCCTCCCCCTTCTGTTCTGGTACAAGGCTCTATGATCTTGGACTCATCTTCTCCTCCTAGTACCAATGCCATTGTACATGATCCAGGAACTACACCACAGCCCCTAAAGGATACTGGTGGGCCCAGCAGTGAGACAAATAGGCAGAATGAAATTGACCGGCGCGAAGATGTGCCTAGCACATTAAATAGGATTTCTGTTCCACTCGTGACTAGAAGCACGCTTGAAGTTATGATACCAGACCATGCAGCTTCGAAACTCATAACTAAATCAAGAAACAAGCTCGCTCAGATCAGTGAGTTGTCGGGAGCTAATGTAACACTAGTAGAAGATAGACCAGAGGAAACACAAAAGATTATTCAAATATCGGGTACACCCGAGCAGGCAGAGCGAGCCCAAAGCTTGCTTCAGGGCTTTATCTTAAGCACGCAAGAAGATGGCCCTTAA 1995 46.92 MDRSRSKRNYYYDHQDYDQEAAVGRTRPRYNHHYQNNPHRHRGSGAQQQQQQRPPNKPQDNNLMVTTSYRILCHDIKAGGVIGKSGTIIKSIRQHTGAWINVHELMPGDEERIIEISDTRRRDPDGRMPSFSPSQEALLLIHERILESDVGASGGFYGGGGGGGGEEEDDYGGVRGGGGGNRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQIVGDANAVKNAIVIISSRLRESQHRDRSHGNPRQHSPERFFPPDDDYIPHVSNPQQRRGPIDGPAFRSRMSSTHNARNNNYSPRPSGFPFDSGAAPMVEEYQPYYNEDLVFKILCPVEKVDSVVGESDGIIELLQNDIGVDVKVSEPISSSEEQIIIVSSGEGPDDELFPAQEALLHIQSRIVNLSPDKDNIITTRLLVPSSDIGCLEGRDGSLSEMKRLTGANVLILPREELPACVSGNDELVQIVGEIRAAREALVEVTYRLRSYLYRELSSQQDNLTPPPSVLVQGSMILDSSSPPSTNAIVHDPGTTPQPLKDTGGPSSETNRQNEIDRREDVPSTLNRISVPLVTRSTLEVMIPDHAASKLITKSRNKLAQISELSGANVTLVEDRPEETQKIIQISGTPEQAERAQSLLQGFILSTQEDGP 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54985322 54988915 - Conep01aG0104000.1 Cone1ag0995 431686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0995 664 CDD KH-I_PEPPER_rpt1_like 345 413 - -
Cone1ag0995 664 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 336 411 IPR036612 GO:0003723(InterPro)
Cone1ag0995 664 ProSiteProfiles Type-1 KH domain profile. 345 412 - -
Cone1ag0995 664 ProSiteProfiles Type-1 KH domain profile. 66 141 - -
Cone1ag0995 664 MobiDBLite consensus disorder prediction 305 322 - -
Cone1ag0995 664 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 180 266 IPR036612 GO:0003723(InterPro)
Cone1ag0995 664 ProSiteProfiles Type-1 KH domain profile. 588 652 - -
Cone1ag0995 664 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 573 651 - GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER)
Cone1ag0995 664 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 66 117 IPR036612 GO:0003723(InterPro)
Cone1ag0995 664 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 582 658 IPR036612 GO:0003723(InterPro)
Cone1ag0995 664 CDD KH-I_PEPPER_rpt1_like 66 139 - -
Cone1ag0995 664 MobiDBLite consensus disorder prediction 257 322 - -
Cone1ag0995 664 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 423 508 IPR036612 GO:0003723(InterPro)
Cone1ag0995 664 MobiDBLite consensus disorder prediction 512 545 - -
Cone1ag0995 664 MobiDBLite consensus disorder prediction 257 282 - -
Cone1ag0995 664 Gene3D K Homology domain, type 1 180 261 IPR036612 GO:0003723(InterPro)
Cone1ag0995 664 CDD KH-I_PEPPER_rpt2_like 185 257 - -
Cone1ag0995 664 MobiDBLite consensus disorder prediction 40 62 - -
Cone1ag0995 664 Gene3D - 344 505 - -
Cone1ag0995 664 ProSiteProfiles Type-1 KH domain profile. 182 252 - -
Cone1ag0995 664 MobiDBLite consensus disorder prediction 512 576 - -
Cone1ag0995 664 CDD KH-I_PEPPER_rpt2_like 431 502 - -
Cone1ag0995 664 Pfam KH domain 69 117 IPR004088 GO:0003723(InterPro)
Cone1ag0995 664 Pfam KH domain 186 252 IPR004088 GO:0003723(InterPro)
Cone1ag0995 664 Pfam KH domain 590 653 IPR004088 GO:0003723(InterPro)
Cone1ag0995 664 Pfam KH domain 431 496 IPR004088 GO:0003723(InterPro)
Cone1ag0995 664 MobiDBLite consensus disorder prediction 1 27 - -
Cone1ag0995 664 Gene3D K Homology domain, type 1 60 179 IPR036612 GO:0003723(InterPro)
Cone1ag0995 664 SMART kh_6 181 257 IPR004087 GO:0003676(InterPro)
Cone1ag0995 664 SMART kh_6 587 657 IPR004087 GO:0003676(InterPro)
Cone1ag0995 664 SMART kh_6 65 146 IPR004087 GO:0003676(InterPro)
Cone1ag0995 664 SMART kh_6 344 417 IPR004087 GO:0003676(InterPro)
Cone1ag0995 664 SMART kh_6 428 502 IPR004087 GO:0003676(InterPro)
Cone1ag0995 664 MobiDBLite consensus disorder prediction 1 62 - -
Cone1ag0995 664 Gene3D K Homology domain, type 1 587 659 IPR036612 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0995 K21444 - - csv:101217605 887.871
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0995 Cone-Chr1:54985322 Cone8ag1030 Cone-Chr8:9536163 1.15E-59 dispersed
Cone1ag0995 Cone-Chr1:54985322 Cone5ag0699 Cone-Chr5:2999079 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1025 . . . . Bpe03g00230 . . . Cmo16g00045 . . . . . Sed07g0871 . Cpe14g00031 Bhi01g01505 Tan01g0081 Cmetu06g1355 . Hepe07g0050 Mch10g0048 . . . . . . . . Cone1ag0995 Cone5ag0699 . . . . . Cme06g01156 Blo07g00331 . . . . . . . . . . Cma16g00038 Cma18g01323 Car16g00038 Car18g01235 . . . . . . . . . Cla05g00979 Cam05g1071 . . . . Cre05g1090 . Csa03g01974 Chy06g01186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007315 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 37