Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0997 ATGGCGAAGGCAGTGGTTTATACCCTTCTAACCGCCGCCTTCGTCGTCTTAATCATCCTTCCATCATCAAACCAGTCCGGTAGGAACTGCCGAAACATAACACGTCGTTTTGGCTACAAGCATCCTGTCCCCACTTTCGACCCATTAATCATGAAAGTCGAAAGAAACATGGAGGAAAAGGGATTGAGAAAGTCCGAAAATCAGAAGGATCATAAGGAAAACAAAGCGTTTGCTGAAGAAGCTGCGAATGTACTTGAATATTTCAGCAATGAAGGTAAGTTGAATATTTCTAAGAGGTTGACCGCTCTGTTCCCTGTTTTAGATAGGGACCCTAAAGATGGAGCCGTTGATTTGAATGAGATGGAGAGCTGGGTTAAACAGCAAGCTGTAGATGGACGCACTTATAGGACCCAGAAAGAGTTGTTATCTCGTGATAAGAATGGAGATGGTATCATTTCTTTTCAGGAGTATTTGCCTCAATTTTCTGATGAAGATATAGCAAAAAATGGAATGGAGCATGGAGAGGCTGGGTGGTGGAAGGAACAATTTGCAAATGCTGATGCTGATCAGAATGGATTTTTAAACTTCGAGGAATTTAAAGACTTTATGCACCCAGAAGATAGCAACAACGAGAAAATACAGGAGTGGCTGTTAAGGGAAAAGATAAAAGGGATGGACCATAATAGGGATGGAAAGCTAGATTTTAAGGAGTTTTTAGAGCATGTATATGCTGGATACAAGACTTATGCTGAATATGAATCTTCTGGGACTCGTAAACTACCCACGGCCGAAGAGAAGTTCGTTGAGCTTGATCTTAACAAGGATAAATTTTTGACAGTCGAGGAATTGAAACCCATACACCAGTTTCTTCACTCTGGAGAACTGTTTCAGTCTAAATATTACGCAAGTTATTTGATCCATGAGGCTGATGGTAATGAAGATGGCAAGCTAACACTTGATGAGATGCTGAAAAATGAGGATCTTTTCTACAATACAGTCTATGACTACATCAATGATCATCGTAACGACGATTTCCATGATGAACTTTGA 1050 40.57 MAKAVVYTLLTAAFVVLIILPSSNQSGRNCRNITRRFGYKHPVPTFDPLIMKVERNMEEKGLRKSENQKDHKENKAFAEEAANVLEYFSNEGKLNISKRLTALFPVLDRDPKDGAVDLNEMESWVKQQAVDGRTYRTQKELLSRDKNGDGIISFQEYLPQFSDEDIAKNGMEHGEAGWWKEQFANADADQNGFLNFEEFKDFMHPEDSNNEKIQEWLLREKIKGMDHNRDGKLDFKEFLEHVYAGYKTYAEYESSGTRKLPTAEEKFVELDLNKDKFLTVEELKPIHQFLHSGELFQSKYYASYLIHEADGNEDGKLTLDEMLKNEDLFYNTVYDYINDHRNDDFHDEL 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55000758 55002375 - Conep01aG0104200.1 Cone1ag0997 431688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0997 349 ProSitePatterns EF-hand calcium-binding domain. 187 199 IPR018247 -
Cone1ag0997 349 ProSitePatterns EF-hand calcium-binding domain. 226 238 IPR018247 -
Cone1ag0997 349 PANTHER RETICULOCALBIN 65 349 - GO:0005509(PANTHER)|GO:0005783(PANTHER)
Cone1ag0997 349 ProSiteProfiles EF-hand calcium-binding domain profile. 258 293 IPR002048 GO:0005509(InterPro)
Cone1ag0997 349 SMART efh_1 99 128 IPR002048 GO:0005509(InterPro)
Cone1ag0997 349 SMART efh_1 178 206 IPR002048 GO:0005509(InterPro)
Cone1ag0997 349 SMART efh_1 262 290 IPR002048 GO:0005509(InterPro)
Cone1ag0997 349 SMART efh_1 217 245 IPR002048 GO:0005509(InterPro)
Cone1ag0997 349 Gene3D - 50 159 - -
Cone1ag0997 349 SUPERFAMILY EF-hand 175 325 IPR011992 -
Cone1ag0997 349 Pfam EF-hand domain pair 264 324 IPR002048 GO:0005509(InterPro)
Cone1ag0997 349 Pfam EF-hand domain pair 179 242 IPR002048 GO:0005509(InterPro)
Cone1ag0997 349 SUPERFAMILY EF-hand 93 159 IPR011992 -
Cone1ag0997 349 ProSitePatterns EF-hand calcium-binding domain. 271 283 IPR018247 -
Cone1ag0997 349 ProSiteProfiles EF-hand calcium-binding domain profile. 174 209 IPR002048 GO:0005509(InterPro)
Cone1ag0997 349 ProSitePatterns EF-hand calcium-binding domain. 145 157 IPR018247 -
Cone1ag0997 349 Gene3D - 160 242 - -
Cone1ag0997 349 Gene3D - 243 329 - -
Cone1ag0997 349 ProSiteProfiles EF-hand calcium-binding domain profile. 218 248 IPR002048 GO:0005509(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0997 K23901 - - mdm:103443987 390.963
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0810 Cone-Chr1:54007878 Cone1ag0997 Cone-Chr1:55000758 5.22E-50 dispersed
Cone1ag0997 Cone-Chr1:55000758 Cone9ag1599 Cone-Chr9:11454096 2.84E-07 dispersed
Cone1ag0997 Cone-Chr1:55000758 Cone5ag1016 Cone-Chr5:4403424 2.54E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1018 . Blo15g00083 . . . Bpe07g01020 . . . . . . . . Sed07g2373 . . Bhi01g01509 Tan01g0073 Cmetu06g2632 . Hepe07g0046 Mch10g0046 . . . . . . . . Cone1ag0997 . . . . . . Cme06g01158 . . . . . . . Bma12g01216 . . . . . . Car18g01232 . . . . . . . . . Cla05g00982 Cam05g1073 Cec05g1080 Cco05g1072 Clacu05g1067 Cmu05g1018 Cre05g1092 . Csa03g01971 Chy06g01184 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012485 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29