Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1008 ATGGGATCAGATCCAAAGATTCATGTATTTGAAGAAGTGGAGAAGCACAACAAGATCAAAGATTGTTGGCTTGTTATTTCTGGGAAGGTATACGATGTAACACCCTTCATGGATGATCATCCTGGAGGTGATGAAGTATTGGTAGCAGCAACCGGAAAAGACGCAACAAGTGATTTTGATGACGTGGGGCACAGTGATGCTGCTAGAGATATGATGGAAAAATATTACATTGGAGAAATCGATCCTGCTACTGTTCCGATGAAAAGGCCGAAGGGTCTACCACAACAAGCCATTTACAATCCGGACAAGACACCTGAATTTGTGATCAAGCTTTTACAGTTTCTAGTTCCCCTCTTGATCTTGGGTTTAGCATTTACCGTCCGTTACTACACAAAGACTGAGGCCAAAACCGAGTAG 417 42.69 MGSDPKIHVFEEVEKHNKIKDCWLVISGKVYDVTPFMDDHPGGDEVLVAATGKDATSDFDDVGHSDAARDMMEKYYIGEIDPATVPMKRPKGLPQQAIYNPDKTPEFVIKLLQFLVPLLILGLAFTVRYYTKTEAKTE 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55070293 55071436 + Conep01aG0105600.1 Cone1ag1008 431699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1008 138 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Cone1ag1008 138 FunFam Cytochrome b5 type B 2 85 - -
Cone1ag1008 138 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Cone1ag1008 138 PANTHER CYTOCHROME B5 5 132 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Cone1ag1008 138 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 80 IPR001199 -
Cone1ag1008 138 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 90 IPR036400 -
Cone1ag1008 138 Gene3D - 2 86 IPR036400 -
Cone1ag1008 138 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Cone1ag1008 138 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Cone1ag1008 138 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Cone1ag1008 138 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Cone1ag1008 138 SMART Cyt_b5_2 10 81 IPR001199 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1008 Cone-Chr1:55070293 Cone4ag0397 Cone-Chr4:1806930 2.62E-57 dispersed
Cone1ag1008 Cone-Chr1:55070293 Cone14ag0449 Cone-Chr14:2102538 5.84E-54 wgd
Cone1ag1008 Cone-Chr1:55070293 Cone15ag0479 Cone-Chr15:2260879 8.67E-49 wgd
Cone1ag1008 Cone-Chr1:55070293 Cone18ag0994 Cone-Chr18:7305465 5.18E-46 wgd
Cone1ag1008 Cone-Chr1:55070293 Cone5ag0716 Cone-Chr5:3082824 5.86E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1008 K23490 - mdm:103444212 229.95