Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1012 ATGGAGAAAAGTGAGGAGATTTCAAACATACCGAAGAAGAAGAAAGGGAAGGGTGGGAGGAACAAGAGGAGGTTCAGCGACGAACAGATTCGGTCCCTGGAAACAGTTTTCGAAACGCAGACACAGATCGAGCCGACAAAGAAAGCGGAGGTGGCAAGAGAGCTTGGCCTTCAACCTCGTCAGGTGGCTATATGGTTTCAAAACAGAAGAGCAAGATGGAAGTCTAAGCAGATAGAGAAGGATTTCATTACTCTCAGAGCAAGTTATGATGGTTTAGTCACTAGACTTGAGTCCTTGCAGGAAGAGAAGCAATCCTTGCTCATTCAGTTGCAGAGGCTGAGTGAGCTGATAGAAAAGACCCATGACGGGGATAAAGAAAAGGAAGGAGTTATGGAAGGGGAGAATAGTAGACATGGAGGGAGTTCATATAGTAATGAAACAGACATGAAGCCAATTATTAGTAGTAGTAGCTTAGAGTTAGAAGAGAGGGGGGGAGGAGGAGTGTTGTTCAAGCAACCGGATTATGAGCTCGAATTCATCAATGGTCCACAAGAAGATGATATCATGATGTACAATAATGATATTGAAGAGGAAAAAGGGATTCAGGCAGTTGTGAATGAGAGTTCGTGTGAAGATGCAAATCGTGATAAGAAATGCTACAGTTTTGACTCTTTGGGTGGTCTATTTGATCTGTCGTCGAGTAGTAGTAGCAGCAGCTCGCAGTACTGGTTTGATTTCTGGGCTTGA 747 43.91 MEKSEEISNIPKKKKGKGGRNKRRFSDEQIRSLETVFETQTQIEPTKKAEVARELGLQPRQVAIWFQNRRARWKSKQIEKDFITLRASYDGLVTRLESLQEEKQSLLIQLQRLSELIEKTHDGDKEKEGVMEGENSRHGGSSYSNETDMKPIISSSSLELEERGGGGVLFKQPDYELEFINGPQEDDIMMYNNDIEEEKGIQAVVNESSCEDANRDKKCYSFDSLGGLFDLSSSSSSSSSQYWFDFWA 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55081851 55082679 - Conep01aG0106000.1 Cone1ag1012 431703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1012 248 MobiDBLite consensus disorder prediction 121 148 - -
Cone1ag1012 248 FunFam Homeobox-leucine zipper protein ATHB-7 4 76 - -
Cone1ag1012 248 SUPERFAMILY Homeodomain-like 13 77 IPR009057 -
Cone1ag1012 248 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677(InterPro)
Cone1ag1012 248 Coils Coil 89 116 - -
Cone1ag1012 248 Pfam Homeodomain 20 74 IPR001356 GO:0003677(InterPro)
Cone1ag1012 248 ProSitePatterns 'Homeobox' domain signature. 51 74 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone1ag1012 248 Pfam Homeobox associated leucine zipper 76 116 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone1ag1012 248 PRINTS Lambda-repressor HTH signature 56 72 IPR000047 GO:0003677(InterPro)
Cone1ag1012 248 PRINTS Lambda-repressor HTH signature 47 56 IPR000047 GO:0003677(InterPro)
Cone1ag1012 248 SMART HOX_1 19 80 IPR001356 GO:0003677(InterPro)
Cone1ag1012 248 Gene3D - 3 79 - -
Cone1ag1012 248 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 14 174 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cone1ag1012 248 CDD homeodomain 25 77 IPR001356 GO:0003677(InterPro)
Cone1ag1012 248 MobiDBLite consensus disorder prediction 1 25 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1012 K09338 - - rcu:8266293 150.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1012 Cone-Chr1:55081851 Cone2ag0135 Cone-Chr2:717434 4.08E-20 dispersed
Cone1ag1012 Cone-Chr1:55081851 Cone11ag0517 Cone-Chr11:2696954 3.90E-36 wgd
Cone1ag1012 Cone-Chr1:55081851 Cone5ag0719 Cone-Chr5:3095360 3.20E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g986 . . Bda05g00138 Bda07g01954 . . Bma10g01316 Bma14g02025 Cmo16g00028 Cmo18g01371 . . . . . . . . . . . . . . . . . . . . . Cone1ag1012 Cone5ag0719 . . . . . . . . . . . . . . . . . Cma16g00024 Cma18g01338 Car16g00022 Car18g01252 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001722 2 3 1 3 2 2 3 2 2 1 2 2 3 2 2 3 2 3 0 2 2 2 2 2 2 2 2 5 2 3 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45481 PF01852 START 2.10E-45 CL0209 Cone TF