Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1015 ATGGTAGTTGCAGAGGCAGCAGCAGCAGCAGCATCTATAGGATATTATGCTGCTCCCTTCACCGATGCACAGTGGGAAGAGCTTGAGAGACAAGCAATGATTTACAAGTACATGGTCGCCTCCATTCCTGTCCCTCTCGATCTTCTCTTCCCTAATCCTTTCCACAATATCAACAACAACAATCCCAGAATTGTCAACCCTTTCGGCGACGGAGGAGGAGTCGGCGGTTGCGGTGGTGGGTTGAAGCTGAGGTTATCGAACAGTACAGATCCAGAGCCAGGGCGGTGCCGGAGAACAGATGGGAAGAAGTGGAGGTGCTCAAGAGATGCGGCGGCGGGTCACAAGTACTGTGAGCGCCATATGCATAGAGGCCGTCCCCGTTCAAGAAAGCCTGTGGAAATTTATCCTAACACTAGAAAAGCGAAAACCCGCCATGAGAACCATGTTCTTCCTTCTTGTTCTACTACTACTACTACCATATCTGAACTTAACAGCAACAGCAATAATGGAAGTTCTGATCAATGGCAAATTTTGGGTTACAATCAAAATCCTCTGTTTCTCAACAAAAGTCCAGCTTTTGACTCCATACCCTCCTCTGTTCCATCTCACAAGGAACATAGGAGCTTGGAGTGGTTGACGAATGAAGAAGACATAAATGAGCCTATTAACCAGATAAGAAATAGAGACTCCGCTTCATTTCTGAACCAAACTCCAAAGGATTATATTGATGCGTGGTCTAAAACAATGGCAGATGAACAGAGCTCTATTTCATTGACTCTTTCAATGGGTGATCATGCCATGGTTCATCATATTCATATGGGCTTAAACTTAAGCCCAGTTGAATCTATAAAAGAACATAATCATCATGATCAATATCTCGAAGGTGTTGGTGGTAACAAATCCCTGATATCGAGTTGGGCCAGTCCGTCTTCTTGGGCTGCATCTTCCACACCGGGCGGGCCATTGGCTGAGGCCTTAAGACCCAGTTCCACTGCTGCCAGCGGGGATTTGAGTAGCCCGCCCATAACAGCGATTTCTTCACCGTCTGCGGTTCTTCAGAAAACAGTTGCTTCTGTTTCGGATAGTGGTGGGAGCAAGTAG 1101 46.68 MVVAEAAAAAASIGYYAAPFTDAQWEELERQAMIYKYMVASIPVPLDLLFPNPFHNINNNNPRIVNPFGDGGGVGGCGGGLKLRLSNSTDPEPGRCRRTDGKKWRCSRDAAAGHKYCERHMHRGRPRSRKPVEIYPNTRKAKTRHENHVLPSCSTTTTTISELNSNSNNGSSDQWQILGYNQNPLFLNKSPAFDSIPSSVPSHKEHRSLEWLTNEEDINEPINQIRNRDSASFLNQTPKDYIDAWSKTMADEQSSISLTLSMGDHAMVHHIHMGLNLSPVESIKEHNHHDQYLEGVGGNKSLISSWASPSSWAASSTPGGPLAEALRPSSTAASGDLSSPPITAISSPSAVLQKTVASVSDSGGSK 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55095021 55096322 + Conep01aG0106300.1 Cone1ag1015 431706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1015 366 MobiDBLite consensus disorder prediction 331 345 - -
Cone1ag1015 366 ProSiteProfiles WRC domain profile. 90 134 IPR014977 -
Cone1ag1015 366 MobiDBLite consensus disorder prediction 313 345 - -
Cone1ag1015 366 Pfam QLQ 19 51 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone1ag1015 366 Pfam WRC 91 133 IPR014977 -
Cone1ag1015 366 ProSiteProfiles QLQ domain profile. 19 54 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone1ag1015 366 PANTHER GROWTH-REGULATING FACTOR 5 17 258 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Cone1ag1015 366 SMART QLQ_2 18 54 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1015 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1015 Cone-Chr1:55095021 Cone7ag1319 Cone-Chr7:9673572 3.65E-33 dispersed
Cone1ag1015 Cone-Chr1:55095021 Cone5ag0722 Cone-Chr5:3113204 1.58E-208 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g978 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1015 Cone5ag0722 . . . . . . . . . . . . Bma08g00399 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020797 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 4
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45482 PF04499 SAPS 2.00E-39 No_clan Cone TF