Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1017 ATGGCGGTGGCGGAGAATGATGGGGTCAAAATCGGCTCATCGAGTCAAAGTTTGGACGATTCCGTCGTTTCACCTCAGTCTAATCCACCTAACGAGCCTGAAAAGCAAAAACCCAGATACGATTCTTCCATTTCCAGTGTAGAGCCCGACTCTCAGTCAAACGGAGGTGATGATCAGAAAAATCATCCGCAAGAGAAGACCGCAGAGAGTGGGCCCACTGGAAATTACGAGGCTAATCAGATGGGTGAGATTCAAAATGGGTTTGAAGCAAATGGAGTCAAAGGGGTCTCTAATGGTGGAGGAGGAGGGTATGAAGGCATTAATCAGAGGTCTTCTATTCATAATAATACTAATGGGACGACTGATCATGATGGGGAAGAAAGCTTCAAGAGGGATATGAGAGATTTGGCTGAGCTCTTGTCTAACTTGAATCCCATGGCAGAGGAATTTGTTCCTCCTTCCCTTGTCAAAAACCACCATGGCTTCTTTGGAGCTGGTGGCTTTGGCTTTACTAACAATTTTGTACTGCAACCTAATTCTGGAAATGCTAATGGAAACACTTATCGAAGGAAGAATGGATATAGTCCAGGGAGGAGGAGGATGAATTATAAGATGAGTGCAGCTCAAAGGGAAGAGATGACTAGGAGGACTGTCTATGTATCTGACATTGATCAGCAGGTCACTGAAGAACAACTTGCTGCTCTCTTCCTAAACTGTGGGCAGGTTGTTGATTGTCGTGTATGCGGTGATCCAAATTCCATTCTCCATTTTGCCTTTGTGGAGTTTACTGATGAAGACGGTGCGAGGGCGGCTCTAAATCTTTCAGGGACCATGCTCGGTTATTACCCGGTTAGAGTGCTGCCTTCAAAAACTGCAATTGCACCTGTTGATCCACAGTTTCTGCCTAGGTCCGCAGATGAACGAGAGATGTGCTCGAGAACTATATATTGTACAAATATTGACAAGAAGGTTACTCAAGCAGATGTCAAGCTCTTTTTTGAATCACTCTGTGGAGAGGTTCAACGCCTCAGGCTACTTGGAGACTACCATCACTCCACTCGGATTGCTTTTGTTGAGTTCACGATGGCTGAAAGTGCAATTGCTGCTCTAAACTGCAGTGGTGTGGTTCTAGGTTCCTTACCCATAAGGGTAAGCCCATCAAAGACTCCAGTCCGGCCCCGCTCTCCTCGCCCCCAACTGCTCTGA 1206 46.27 MAVAENDGVKIGSSSQSLDDSVVSPQSNPPNEPEKQKPRYDSSISSVEPDSQSNGGDDQKNHPQEKTAESGPTGNYEANQMGEIQNGFEANGVKGVSNGGGGGYEGINQRSSIHNNTNGTTDHDGEESFKRDMRDLAELLSNLNPMAEEFVPPSLVKNHHGFFGAGGFGFTNNFVLQPNSGNANGNTYRRKNGYSPGRRRMNYKMSAAQREEMTRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILHFAFVEFTDEDGARAALNLSGTMLGYYPVRVLPSKTAIAPVDPQFLPRSADEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPRPQLL 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55099894 55103814 - Conep01aG0106500.1 Cone1ag1017 431708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1017 401 CDD RRM1_CID8_like 215 293 IPR034823 -
Cone1ag1017 401 SUPERFAMILY RNA-binding domain, RBD 304 396 IPR035979 GO:0003676(InterPro)
Cone1ag1017 401 MobiDBLite consensus disorder prediction 1 127 - -
Cone1ag1017 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 291 IPR000504 GO:0003723(InterPro)
Cone1ag1017 401 SMART rrm1_1 217 287 IPR000504 GO:0003723(InterPro)
Cone1ag1017 401 SMART rrm1_1 314 385 IPR000504 GO:0003723(InterPro)
Cone1ag1017 401 SUPERFAMILY RNA-binding domain, RBD 188 293 IPR035979 GO:0003676(InterPro)
Cone1ag1017 401 FunFam Polyadenylate-binding protein-interacting protein 10 307 385 - -
Cone1ag1017 401 Pfam Ataxin-2 C-terminal region 141 154 IPR009818 -
Cone1ag1017 401 MobiDBLite consensus disorder prediction 42 58 - -
Cone1ag1017 401 CDD RRM2_CID8_like 309 390 IPR034825 -
Cone1ag1017 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 389 IPR000504 GO:0003723(InterPro)
Cone1ag1017 401 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 186 395 - -
Cone1ag1017 401 MobiDBLite consensus disorder prediction 104 119 - -
Cone1ag1017 401 FunFam Polyadenylate-binding protein-interacting protein 11 180 293 - -
Cone1ag1017 401 MobiDBLite consensus disorder prediction 9 30 - -
Cone1ag1017 401 Pfam RNA recognition motif 218 280 IPR000504 GO:0003723(InterPro)
Cone1ag1017 401 Pfam RNA recognition motif 315 382 IPR000504 GO:0003723(InterPro)
Cone1ag1017 401 Gene3D - 177 293 IPR012677 -
Cone1ag1017 401 Gene3D - 298 396 IPR012677 -
Cone1ag1017 401 MobiDBLite consensus disorder prediction 66 86 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1017 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0580 Cone-Chr12:4405542 Cone1ag1017 Cone-Chr1:55099894 5.32E-136 dispersed
Cone1ag1017 Cone-Chr1:55099894 Cone8ag0590 Cone-Chr8:4950653 4.49E-135 dispersed
Cone1ag1017 Cone-Chr1:55099894 Cone5ag0725 Cone-Chr5:3119691 7.35E-258 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g973 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1017 Cone5ag0725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003779 2 1 2 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 45