Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1020 ATGGTTGCTCTTGTTTCTTCCTTACAACCCACCCTCCATTCCTTTTCTTATTCTACTTCCCCATCTACGATTTCTCCTCTCAGTGCTAAAGTCGACGCTTTGTCTGCTCATAAATCGACTTTCTTGAAGTCATCCGACTGTTTTAGACCCATCCAGATTGCTCCCAGCAACAGAGTTAACCATGGCAGAAGCTATCTTTCTACTATCAGCATGTCGTGGGACGGTCCACTCTCCTCGGTGAAATTAATCATCCAAGGAAGGAATTTAGAGTTAACTGAAGCATTGAAGAAGCATGTGGAAGATAAGGTAGGCAAGGCAGTTCAGAAGCACAGCAATTTAGTGAGAGAAGTTGATGTAACTTTGTTCACCAAAAAGCATGGAGTGATTCGGGCCGAGGAGGATGCTGAGACCACCTATGAGAGTATAGATTTGGCATCTTCGATTACACAAATAAAGTTGAGGAAGATTAAAGAGAAGGATATCGATCATGGTCGACACATGAAGGGATTTGACAGATCGAAGGTTAGAGAGACTGCCATCCCACAAATCTTAGTTGAAGATGAAGAAGAAGAGGATGTTTCTCAAGAACAGGATGCAGATCAGTTAGTTGGTGAGATTGTTCGGACAAAACATTTCGATATGCCACCATTGACAGTCAACGAAGCAATAGAGCAGCTGGAAAACCTTGATCATGACTTCTATGCTTTCAGAAATGAAGAAACTGGTGAGATTAATATATTGTACAAGAGAAAAGCTGGATGGTATGGGCTCATCATACCAAAAGAAAATGGTGAAGCTGAGAAAATGGAGGTTAAACCAGCTAGAGAACCTTCCTTGGCTGAAATAAATCGATCTTAA 858 41.61 MVALVSSLQPTLHSFSYSTSPSTISPLSAKVDALSAHKSTFLKSSDCFRPIQIAPSNRVNHGRSYLSTISMSWDGPLSSVKLIIQGRNLELTEALKKHVEDKVGKAVQKHSNLVREVDVTLFTKKHGVIRAEEDAETTYESIDLASSITQIKLRKIKEKDIDHGRHMKGFDRSKVRETAIPQILVEDEEEEDVSQEQDADQLVGEIVRTKHFDMPPLTVNEAIEQLENLDHDFYAFRNEETGEINILYKRKAGWYGLIIPKENGEAEKMEVKPAREPSLAEINRS 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55112143 55113520 - Conep01aG0106800.1 Cone1ag1020 431711

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1020 285 FunFam ribosome-binding factor PSRP1, chloroplastic 216 267 - -
Cone1ag1020 285 CDD RaiA 81 159 IPR003489 GO:0044238(InterPro)
Cone1ag1020 285 PANTHER 30S RIBOSOMAL PROTEIN 29 121 IPR050574 GO:0022627(PANTHER)|GO:0043024(PANTHER)|GO:0045900(PANTHER)
Cone1ag1020 285 Pfam Sigma 54 modulation/S30EA ribosomal protein C terminus 205 257 IPR032528 -
Cone1ag1020 285 Gene3D - 81 171 IPR036567 -
Cone1ag1020 285 Gene3D - 216 268 IPR038416 -
Cone1ag1020 285 Pfam Sigma 54 modulation protein / S30EA ribosomal protein 83 159 IPR003489 GO:0044238(InterPro)
Cone1ag1020 285 SUPERFAMILY Ribosome binding protein Y (YfiA homologue) 81 166 IPR036567 -
Cone1ag1020 285 MobiDBLite consensus disorder prediction 265 285 - -
Cone1ag1020 285 MobiDBLite consensus disorder prediction 265 279 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1020 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1020 Cone-Chr1:55112143 Cone5ag0727 Cone-Chr5:3132623 1.40E-171 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g964 . . . Bda07g01958 . . . Bma14g02029 Cmo16g00020 . . . . . . . Cpe14g00016 . . . . . . . . . . . . . . Cone1ag1020 Cone5ag0727 . . . . . . . Blo09g00002 . . . . . . . . . . . Car16g00017 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012302 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29