Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone1ag1021 | ATGGGAGAGGTGGTGGTAAGCAGTGTGGAAATGGAAGATAGAAGGCAGAGTGATACAAAGATGGAAGAGCAGGAAGAGAAGAGGAAGAAAGATGGGAGTTCAGCTGGTGTTGCTGTGAAGTGGGAGAGATTTTTGCAGAGGATGAATCTTAGAGTATTGGTGGTCGAATCTGATGATTCAACGAGGCAGATTATCGTTGCGCTTCTTAGAAAATGTAGCTACAAAGTTGCTGCTGTTCCTGATGGCCTAAAAGCATGGGAGCTACTTAAGAAAAGTCCCCACAACGTAGATCTCATATTGACAGAAGTGGATCTACCATCAATATCTGGATTTGCTCTACTGACGTTAATGATGGAGCACGAGATTTGCAAAAATATACCTGTTATAATGATGTCCTCAAAGGATTCTATTCATACTGTTTACAAATGCATGGCAAGAGGCGCTGCAGACTACCTTGTTAAGCCAATTAGGAGAAATGAGCTAAGAAATCTTTGGCAGCATGTTTGGAGAAGACAATCTTCAACTGCTCACAGAAAGAGACCAAGAGATGAGATTGTCGCACTTGAAAAGATTGAGGTCACTTCAGAGGATCAAAGTGCGAGCAATCATTCAAGTGGTAATATTGCCGATATGCAGAGGAATAACAAATATGTTGAGAAAGGGAGCGACGTTCAGAGCTCCTGTACAAAGCCAGATTTTGAAGCGGAAAATATTCGGAAATCTTCTGAGCCAAACCCGAGACAGTTATCTCTTAATCACTTGAAGTTACAGCAGACCGAAGCCGAAACCGAATTATGCCAGAAACTGCCTACACTTGAAAGTGAAGCTGGAGGATCTGCAGCTGGCGCATATGAAGATACTGATGCAGCAATTACTCTAAGCATTGGTATAGAGCCAAGCAGTTTAAGGATTGATACTTACACGGCTCATGAAGAATGTAACAATAATATTGCCCCTGCCTGCACTTCTAGAGATGCTAGTAACTTGATTCAGGCATTTACCAACTATCCTAGCTTCACTCTAAGAACTACTCCAACTAGTTGTACAAGCAACTTTGGTTGTAATCCTCAGTTGGATCTTCCCTTCAGAGCATGTCATCTCAATGGTTTTCAAGATAGTAGAGCTGAAGAACGGCATACTCTTAGGCAATCCAGTGTCTCAGCATTTACACGATACTCTAACAAGTCATTGCAGCATCTCCAGCAAAAACATGACCTTACTTGTGCTCAACAGAAGGAATATGAATCAAATGCTGAGAAACATTCAGTTGCTACTACTTCTACTACTACTGACTATGCCTCTGATTTCCCTGATCCCACACTAAACATGCAAAGCAGTACACGTTCTCTGGCTACTGGTCAATCCAACCAATCTACTATTACGACAATCCCTGTTCCCATTTTAGTGAAAGGTGTAAGGCTTAATAATAACCAATCCTCTGGCTGTGGTTCTGTGTTTTCTCCTATGTTATATACACAACCAGCTTCTTCACCTTCACCAAACCAATCTGTCCATCCTGTATCTTCCGCCTTTCAAATGAACACATTCTATCACTCAAATCTTGAAAATCATAACTCTGACCATCCTTCTGAACAAAATGCTAACCGTGTCATAAACCGAAGATCAGTGCAAGAGCAGGGAAACATAAACTTGGATTGTTTCGAGGACCAAGGGCATATTTCTCCTAGCACGGATCACAGTTCAAGTAGTAGCTTCTGTAATGGAGCAGTAACTCATCTTAATAGCATGGGTTATGGAAGAGCTTGTGGAAGCGACAATAATAACATGAGTCGGTCTGCCATTGTTGGGCCTGCACCAGAGAACAAAAATGAAGAATCTTTCTTTCCTCACATGGGAAATTCTAATCAGTCTACTCAGAGAGAAGCAGCTCTTACGAAGTTCCGGTTGAAACGCAAAGATAGATGCTACGCGAAAAAGGTTCGATATGAGAGCAGGAAAAAACTTGCTGAGCAACGACCTAGAGTGAAAGGGCAATTTATCAGGCAAGTGCAAATGGATCCATCGTCTTCGGAAAACAATGGCAATTCTCTTAACGGTTTTATTCAACTCAAGGCCTCAGAATGA | 2085 | 41.87 | MGEVVVSSVEMEDRRQSDTKMEEQEEKRKKDGSSAGVAVKWERFLQRMNLRVLVVESDDSTRQIIVALLRKCSYKVAAVPDGLKAWELLKKSPHNVDLILTEVDLPSISGFALLTLMMEHEICKNIPVIMMSSKDSIHTVYKCMARGAADYLVKPIRRNELRNLWQHVWRRQSSTAHRKRPRDEIVALEKIEVTSEDQSASNHSSGNIADMQRNNKYVEKGSDVQSSCTKPDFEAENIRKSSEPNPRQLSLNHLKLQQTEAETELCQKLPTLESEAGGSAAGAYEDTDAAITLSIGIEPSSLRIDTYTAHEECNNNIAPACTSRDASNLIQAFTNYPSFTLRTTPTSCTSNFGCNPQLDLPFRACHLNGFQDSRAEERHTLRQSSVSAFTRYSNKSLQHLQQKHDLTCAQQKEYESNAEKHSVATTSTTTDYASDFPDPTLNMQSSTRSLATGQSNQSTITTIPVPILVKGVRLNNNQSSGCGSVFSPMLYTQPASSPSPNQSVHPVSSAFQMNTFYHSNLENHNSDHPSEQNANRVINRRSVQEQGNINLDCFEDQGHISPSTDHSSSSSFCNGAVTHLNSMGYGRACGSDNNNMSRSAIVGPAPENKNEESFFPHMGNSNQSTQREAALTKFRLKRKDRCYAKKVRYESRKKLAEQRPRVKGQFIRQVQMDPSSSENNGNSLNGFIQLKASE | 694 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 55118294 | 55122107 | + | Conep01aG0106900.1 | Cone1ag1021 | 431712 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone1ag1021 | 694 | MobiDBLite | consensus disorder prediction | 420 | 438 | - | - | |
Cone1ag1021 | 694 | CDD | psREC_PRR | 52 | 155 | - | - | |
Cone1ag1021 | 694 | MobiDBLite | consensus disorder prediction | 414 | 438 | - | - | |
Cone1ag1021 | 694 | SMART | REC_2 | 50 | 165 | IPR001789 | GO:0000160(InterPro) | |
Cone1ag1021 | 694 | MobiDBLite | consensus disorder prediction | 219 | 247 | - | - | |
Cone1ag1021 | 694 | Pfam | Response regulator receiver domain | 52 | 163 | IPR001789 | GO:0000160(InterPro) | |
Cone1ag1021 | 694 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Cone1ag1021 | 694 | Pfam | CCT motif | 627 | 669 | IPR010402 | GO:0005515(InterPro) | |
Cone1ag1021 | 694 | ProSiteProfiles | CCT domain profile. | 627 | 669 | IPR010402 | GO:0005515(InterPro) | |
Cone1ag1021 | 694 | MobiDBLite | consensus disorder prediction | 193 | 212 | - | - | |
Cone1ag1021 | 694 | ProSiteProfiles | Response regulatory domain profile. | 51 | 169 | IPR001789 | GO:0000160(InterPro) | |
Cone1ag1021 | 694 | MobiDBLite | consensus disorder prediction | 194 | 212 | - | - | |
Cone1ag1021 | 694 | MobiDBLite | consensus disorder prediction | 671 | 694 | - | - | |
Cone1ag1021 | 694 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 28 | 265 | IPR045279 | GO:0009736(InterPro) | |
Cone1ag1021 | 694 | MobiDBLite | consensus disorder prediction | 8 | 34 | - | - | |
Cone1ag1021 | 694 | Gene3D | - | 48 | 298 | - | - | |
Cone1ag1021 | 694 | SUPERFAMILY | CheY-like | 44 | 181 | IPR011006 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag0269 | Cone-Chr10:1282359 | Cone1ag1021 | Cone-Chr1:55118294 | 1.25E-25 | dispersed | |
Cone11ag1091 | Cone-Chr11:8511929 | Cone1ag1021 | Cone-Chr1:55118294 | 2.34E-47 | dispersed | |
Cone11ag1274 | Cone-Chr11:9470078 | Cone1ag1021 | Cone-Chr1:55118294 | 7.52E-46 | dispersed | |
Cone16ag0184 | Cone-Chr16:1189286 | Cone1ag1021 | Cone-Chr1:55118294 | 3.09E-28 | dispersed | |
Cone19ag1288 | Cone-Chr19:8731478 | Cone1ag1021 | Cone-Chr1:55118294 | 3.44E-45 | dispersed | |
Cone1ag1021 | Cone-Chr1:55118294 | Cone3ag0296 | Cone-Chr3:1530099 | 4.89E-46 | dispersed | |
Cone1ag1021 | Cone-Chr1:55118294 | Cone18ag0978 | Cone-Chr18:7213447 | 3.99E-85 | wgd | |
Cone1ag1021 | Cone-Chr1:55118294 | Cone5ag0728 | Cone-Chr5:3135786 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45483 | PF07059 | DUF1336 | 1.80E-52 | No_clan | Cone | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone1ag1021 | K12130 | - | mdm:103439942 | 602.438 |