Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1021 ATGGGAGAGGTGGTGGTAAGCAGTGTGGAAATGGAAGATAGAAGGCAGAGTGATACAAAGATGGAAGAGCAGGAAGAGAAGAGGAAGAAAGATGGGAGTTCAGCTGGTGTTGCTGTGAAGTGGGAGAGATTTTTGCAGAGGATGAATCTTAGAGTATTGGTGGTCGAATCTGATGATTCAACGAGGCAGATTATCGTTGCGCTTCTTAGAAAATGTAGCTACAAAGTTGCTGCTGTTCCTGATGGCCTAAAAGCATGGGAGCTACTTAAGAAAAGTCCCCACAACGTAGATCTCATATTGACAGAAGTGGATCTACCATCAATATCTGGATTTGCTCTACTGACGTTAATGATGGAGCACGAGATTTGCAAAAATATACCTGTTATAATGATGTCCTCAAAGGATTCTATTCATACTGTTTACAAATGCATGGCAAGAGGCGCTGCAGACTACCTTGTTAAGCCAATTAGGAGAAATGAGCTAAGAAATCTTTGGCAGCATGTTTGGAGAAGACAATCTTCAACTGCTCACAGAAAGAGACCAAGAGATGAGATTGTCGCACTTGAAAAGATTGAGGTCACTTCAGAGGATCAAAGTGCGAGCAATCATTCAAGTGGTAATATTGCCGATATGCAGAGGAATAACAAATATGTTGAGAAAGGGAGCGACGTTCAGAGCTCCTGTACAAAGCCAGATTTTGAAGCGGAAAATATTCGGAAATCTTCTGAGCCAAACCCGAGACAGTTATCTCTTAATCACTTGAAGTTACAGCAGACCGAAGCCGAAACCGAATTATGCCAGAAACTGCCTACACTTGAAAGTGAAGCTGGAGGATCTGCAGCTGGCGCATATGAAGATACTGATGCAGCAATTACTCTAAGCATTGGTATAGAGCCAAGCAGTTTAAGGATTGATACTTACACGGCTCATGAAGAATGTAACAATAATATTGCCCCTGCCTGCACTTCTAGAGATGCTAGTAACTTGATTCAGGCATTTACCAACTATCCTAGCTTCACTCTAAGAACTACTCCAACTAGTTGTACAAGCAACTTTGGTTGTAATCCTCAGTTGGATCTTCCCTTCAGAGCATGTCATCTCAATGGTTTTCAAGATAGTAGAGCTGAAGAACGGCATACTCTTAGGCAATCCAGTGTCTCAGCATTTACACGATACTCTAACAAGTCATTGCAGCATCTCCAGCAAAAACATGACCTTACTTGTGCTCAACAGAAGGAATATGAATCAAATGCTGAGAAACATTCAGTTGCTACTACTTCTACTACTACTGACTATGCCTCTGATTTCCCTGATCCCACACTAAACATGCAAAGCAGTACACGTTCTCTGGCTACTGGTCAATCCAACCAATCTACTATTACGACAATCCCTGTTCCCATTTTAGTGAAAGGTGTAAGGCTTAATAATAACCAATCCTCTGGCTGTGGTTCTGTGTTTTCTCCTATGTTATATACACAACCAGCTTCTTCACCTTCACCAAACCAATCTGTCCATCCTGTATCTTCCGCCTTTCAAATGAACACATTCTATCACTCAAATCTTGAAAATCATAACTCTGACCATCCTTCTGAACAAAATGCTAACCGTGTCATAAACCGAAGATCAGTGCAAGAGCAGGGAAACATAAACTTGGATTGTTTCGAGGACCAAGGGCATATTTCTCCTAGCACGGATCACAGTTCAAGTAGTAGCTTCTGTAATGGAGCAGTAACTCATCTTAATAGCATGGGTTATGGAAGAGCTTGTGGAAGCGACAATAATAACATGAGTCGGTCTGCCATTGTTGGGCCTGCACCAGAGAACAAAAATGAAGAATCTTTCTTTCCTCACATGGGAAATTCTAATCAGTCTACTCAGAGAGAAGCAGCTCTTACGAAGTTCCGGTTGAAACGCAAAGATAGATGCTACGCGAAAAAGGTTCGATATGAGAGCAGGAAAAAACTTGCTGAGCAACGACCTAGAGTGAAAGGGCAATTTATCAGGCAAGTGCAAATGGATCCATCGTCTTCGGAAAACAATGGCAATTCTCTTAACGGTTTTATTCAACTCAAGGCCTCAGAATGA 2085 41.87 MGEVVVSSVEMEDRRQSDTKMEEQEEKRKKDGSSAGVAVKWERFLQRMNLRVLVVESDDSTRQIIVALLRKCSYKVAAVPDGLKAWELLKKSPHNVDLILTEVDLPSISGFALLTLMMEHEICKNIPVIMMSSKDSIHTVYKCMARGAADYLVKPIRRNELRNLWQHVWRRQSSTAHRKRPRDEIVALEKIEVTSEDQSASNHSSGNIADMQRNNKYVEKGSDVQSSCTKPDFEAENIRKSSEPNPRQLSLNHLKLQQTEAETELCQKLPTLESEAGGSAAGAYEDTDAAITLSIGIEPSSLRIDTYTAHEECNNNIAPACTSRDASNLIQAFTNYPSFTLRTTPTSCTSNFGCNPQLDLPFRACHLNGFQDSRAEERHTLRQSSVSAFTRYSNKSLQHLQQKHDLTCAQQKEYESNAEKHSVATTSTTTDYASDFPDPTLNMQSSTRSLATGQSNQSTITTIPVPILVKGVRLNNNQSSGCGSVFSPMLYTQPASSPSPNQSVHPVSSAFQMNTFYHSNLENHNSDHPSEQNANRVINRRSVQEQGNINLDCFEDQGHISPSTDHSSSSSFCNGAVTHLNSMGYGRACGSDNNNMSRSAIVGPAPENKNEESFFPHMGNSNQSTQREAALTKFRLKRKDRCYAKKVRYESRKKLAEQRPRVKGQFIRQVQMDPSSSENNGNSLNGFIQLKASE 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55118294 55122107 + Conep01aG0106900.1 Cone1ag1021 431712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1021 694 MobiDBLite consensus disorder prediction 420 438 - -
Cone1ag1021 694 CDD psREC_PRR 52 155 - -
Cone1ag1021 694 MobiDBLite consensus disorder prediction 414 438 - -
Cone1ag1021 694 SMART REC_2 50 165 IPR001789 GO:0000160(InterPro)
Cone1ag1021 694 MobiDBLite consensus disorder prediction 219 247 - -
Cone1ag1021 694 Pfam Response regulator receiver domain 52 163 IPR001789 GO:0000160(InterPro)
Cone1ag1021 694 MobiDBLite consensus disorder prediction 1 34 - -
Cone1ag1021 694 Pfam CCT motif 627 669 IPR010402 GO:0005515(InterPro)
Cone1ag1021 694 ProSiteProfiles CCT domain profile. 627 669 IPR010402 GO:0005515(InterPro)
Cone1ag1021 694 MobiDBLite consensus disorder prediction 193 212 - -
Cone1ag1021 694 ProSiteProfiles Response regulatory domain profile. 51 169 IPR001789 GO:0000160(InterPro)
Cone1ag1021 694 MobiDBLite consensus disorder prediction 194 212 - -
Cone1ag1021 694 MobiDBLite consensus disorder prediction 671 694 - -
Cone1ag1021 694 PANTHER TWO-COMPONENT RESPONSE REGULATOR 28 265 IPR045279 GO:0009736(InterPro)
Cone1ag1021 694 MobiDBLite consensus disorder prediction 8 34 - -
Cone1ag1021 694 Gene3D - 48 298 - -
Cone1ag1021 694 SUPERFAMILY CheY-like 44 181 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0269 Cone-Chr10:1282359 Cone1ag1021 Cone-Chr1:55118294 1.25E-25 dispersed
Cone11ag1091 Cone-Chr11:8511929 Cone1ag1021 Cone-Chr1:55118294 2.34E-47 dispersed
Cone11ag1274 Cone-Chr11:9470078 Cone1ag1021 Cone-Chr1:55118294 7.52E-46 dispersed
Cone16ag0184 Cone-Chr16:1189286 Cone1ag1021 Cone-Chr1:55118294 3.09E-28 dispersed
Cone19ag1288 Cone-Chr19:8731478 Cone1ag1021 Cone-Chr1:55118294 3.44E-45 dispersed
Cone1ag1021 Cone-Chr1:55118294 Cone3ag0296 Cone-Chr3:1530099 4.89E-46 dispersed
Cone1ag1021 Cone-Chr1:55118294 Cone18ag0978 Cone-Chr18:7213447 3.99E-85 wgd
Cone1ag1021 Cone-Chr1:55118294 Cone5ag0728 Cone-Chr5:3135786 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45483 PF07059 DUF1336 1.80E-52 No_clan Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1021 K12130 - mdm:103439942 602.438