Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1024 ATGGATACCAAGGTCTTATCTACCGGAATCCGGCACACAAATCTTCCGGAGAGCTATGTCAGACCGGAGTCCGACCGTCCCCGCCTGTCGGAAGTATTGACATGCGAGAACGTTCCGGTCATCGACTTGGGTATGGAGGATAGAAGCCGTATTGTTGAACTCGTAGGTCATGCTTGCAAGACATACGGCTTTTTCCAGGTGATTAATCATGGCGTGGCGGGAGATGCGGTGGAGAAAATGACAGGGGTGGCGCATGAGTTTTTTGGGTTGCCCGTAGAGGAAAAGTTGAAACTGTACTCCGATGATCCCACAAAAACAGTTAGACTTTCGACTAGTTTTAATGTGAATAAAGAGAAAGTTCATAATTGGAGAGATTATCTTAGGCTCCATTGCTATCCTTTGGACAAGTTTGTTCCTGAGTGGCCTTCTAATCCTCCTCTATTCAAGGAAATAGTGAGCGACTACTGTAGAGAAGTAAGAGAGCTTGGGTTCAGAATACAGGGATTGATATCAGAGAGCTTAGGACTAGAACAAGGTTACATAAAGCAAGTGTTGGGGGAACAAGGACAACATATGGCTGTGAATTATTACCCGCCATGTCCGGAACCAGAGTTGACTTATGGATTGCCAGGCCACACTGACCCCAATGCTCTCACCATTCTTCTTCAAGACCTTCAGGTCGCTGGCCTTCAAGTCCTCAAAGACGGCAAATGGGTCGCTGTTAATCCCATCCCCAATGCCTTTGTCATCAACATTGGCGATCAACTTCAGGCGTTGAGTAATGGGATTTATAAAAGTGTGTGGCACCGGGCGATAGTCAATGCAGATAAACCGAGGCTTTCCGTAGCTTCATTTTTATGTCCGTTCGATGATGCGCTAATCAGCCCGGCAAAACGGCTTACGGAAGATGGAGGCGGGGCGCTATATAGGGGTTACACTTACACCGAGTATTACAAGAAGTTTTGGAGCAGAAACTTGGATCAAGAACATTGTTTGGAGAACTTCAAGAATTCCGGTTGA 1020 46.57 MDTKVLSTGIRHTNLPESYVRPESDRPRLSEVLTCENVPVIDLGMEDRSRIVELVGHACKTYGFFQVINHGVAGDAVEKMTGVAHEFFGLPVEEKLKLYSDDPTKTVRLSTSFNVNKEKVHNWRDYLRLHCYPLDKFVPEWPSNPPLFKEIVSDYCREVRELGFRIQGLISESLGLEQGYIKQVLGEQGQHMAVNYYPPCPEPELTYGLPGHTDPNALTILLQDLQVAGLQVLKDGKWVAVNPIPNAFVINIGDQLQALSNGIYKSVWHRAIVNADKPRLSVASFLCPFDDALISPAKRLTEDGGGALYRGYTYTEYYKKFWSRNLDQEHCLENFKNSG 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55132884 55137105 + Conep01aG0107200.1 Cone1ag1024 431715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1024 339 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 16 320 IPR050295 -
Cone1ag1024 339 SUPERFAMILY Clavaminate synthase-like 12 327 - -
Cone1ag1024 339 Gene3D - 4 328 IPR027443 -
Cone1ag1024 339 Pfam non-haem dioxygenase in morphine synthesis N-terminal 38 143 IPR026992 -
Cone1ag1024 339 Pfam 2OG-Fe(II) oxygenase superfamily 190 288 IPR044861 -
Cone1ag1024 339 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 188 288 IPR005123 -
Cone1ag1024 339 FunFam Protein DMR6-like oxygenase 2 3 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1024 K24028 - - mdm:103439952 576.244
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0892 Cone-Chr15:6904674 Cone1ag1024 Cone-Chr1:55132884 2.39E-55 dispersed
Cone1ag1024 Cone-Chr1:55132884 Cone8ag0582 Cone-Chr8:4835565 5.18E-138 dispersed
Cone1ag1024 Cone-Chr1:55132884 Cone18ag0977 Cone-Chr18:7203829 1.36E-139 wgd
Cone1ag1024 Cone-Chr1:55132884 Cone5ag0731 Cone-Chr5:3151061 3.63E-242 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g957 . . . . . . . Bma14g02030 Cmo16g00018 . . . . . . . . . . . . . . . . . . . . . . Cone1ag1024 Cone5ag0731 . . . . . . . Blo09g00001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009673 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 2 33