Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1025 ATGGCTTCAACAGGAGAAACCCAGATGACTCCAACTCAGGTATCGGATGAAGAAGCAAACCTCTTCGCCATGCAACTGGCCAGCGCTTCTGTTCTTCCTATGGTCCTCAAATCCGCCATAGAGCTTGACCTTCTAGAAATCATAGCACAAGCTGGGCCAGGAGCTTTCCTATCACCTTCTGATATTGCCTCTAAGCTTCCCACCACTAACCCTGATGCAGCTGTGGTGCTTGATCGCATGCTGCGCCTCCTTGCCACTTACTCTGTTCTCACCTACTCTCTACGCACTCTGCCTGATGGCAGAGTTGAGCGGCTTTATGGCTTGGCCCCTGTTTGCAAGTTCTTGACCAAGAACGAAGTTGGTGTTTCTATTGCCGCTCTTTGTCTCATGAATCAGGATAAAGTCCTCATGGAAAGCTGGTACCACTTGAAAGATGCTGTTCTAGAAGGTGGGATTCCATTCAACAAGGCATATGGAATGACAGCATTTGACTATCACGGAACCGATCCAAGATTCAACAAGGTTTTCAACAAGGGAATGGCCGATCACTCAACCATCACCATGAAGAAACTCCTCGAGACCTACAAAGGCTTCGAAGGCCTCAAATCAGTCGTGGATGTCGGAGGTGGGACTGGATCTGTCGTTAGCATGATTGTTTCTAAGTACCCCTCCTTAAAGGGCATCAACTTTGATCTACCTCATGTGATCAAGGATGCTCCGTCTTACCCTGGTGTTGAGCATGTTGGAGGAGATATGTTTGTTAGCATTCCTAAAGGAGATGCCATTTTCATGAAGTGGATCTGTCACGATTGGAGTGATGAGCACTGCTTGAAATTCTTGAAGAACTGCTACGGAGCGCTTCCACATAATGGAAAAGTGATAATAGCGGAGTGTATTCTTCCAGTAGCTCCAGACACGAGCCTGGCAACTAAGGGAGTGGTTCATATCGACATCATCATGTTGGCTCATAATCCAGGAGGCAAAGAGAGGACCCAGAAAGAATTTGAAGGTTTGGCAAAGGGGGCTGGATTTCAGGGCTTCAAAGTGGAGTGTTCTGCTTTCAATACTTATGTCATGGAATTTCTTAAGCGGGTTTGA 1098 46.99 MASTGETQMTPTQVSDEEANLFAMQLASASVLPMVLKSAIELDLLEIIAQAGPGAFLSPSDIASKLPTTNPDAAVVLDRMLRLLATYSVLTYSLRTLPDGRVERLYGLAPVCKFLTKNEVGVSIAALCLMNQDKVLMESWYHLKDAVLEGGIPFNKAYGMTAFDYHGTDPRFNKVFNKGMADHSTITMKKLLETYKGFEGLKSVVDVGGGTGSVVSMIVSKYPSLKGINFDLPHVIKDAPSYPGVEHVGGDMFVSIPKGDAIFMKWICHDWSDEHCLKFLKNCYGALPHNGKVIIAECILPVAPDTSLATKGVVHIDIIMLAHNPGGKERTQKEFEGLAKGAGFQGFKVECSAFNTYVMEFLKRV 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55137199 55139137 - Conep01aG0107300.1 Cone1ag1025 431716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1025 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 361 IPR029063 -
Cone1ag1025 365 Gene3D Vaccinia Virus protein VP39 116 363 IPR029063 -
Cone1ag1025 365 Gene3D - 1 115 IPR036388 -
Cone1ag1025 365 PIRSF O-mtase 1 363 IPR016461 GO:0008168(InterPro)
Cone1ag1025 365 SUPERFAMILY Winged helix DNA-binding domain 15 119 IPR036390 -
Cone1ag1025 365 Pfam Dimerisation domain 34 85 IPR012967 GO:0046983(InterPro)
Cone1ag1025 365 PANTHER O-METHYLTRANSFERASE 18 349 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
Cone1ag1025 365 CDD AdoMet_MTases 204 295 - -
Cone1ag1025 365 FunFam Caffeic acid 3-O-methyltransferase 3 115 - -
Cone1ag1025 365 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 363 IPR016461 GO:0008168(InterPro)
Cone1ag1025 365 FunFam Caffeic acid O-methyltransferase 116 363 - -
Cone1ag1025 365 Pfam O-methyltransferase domain 140 345 IPR001077 GO:0008171(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1221 Cone-Chr19:8477657 Cone1ag1025 Cone-Chr1:55137199 7.59E-74 dispersed
Cone1ag1025 Cone-Chr1:55137199 Cone6ag0022 Cone-Chr6:150563 6.06E-146 dispersed
Cone1ag1025 Cone-Chr1:55137199 Cone14ag0470 Cone-Chr14:2258367 6.89E-74 wgd
Cone1ag1025 Cone-Chr1:55137199 Cone5ag0732 Cone-Chr5:3154646 3.31E-258 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1025 K13066 - mdm:103426529 647.121