Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1027 ATGGCACCTGCTCAAGTTGTCGAAGCCCCCGAACCCGATAAAGAGTCCAGCTTGACTCCTCCATCGATGGACCCCACAAGAAGCTTCAGAAATGGATTGATATTTCATTTTATTTTATTGCAGAATCTCGATGAGTCGATTGTTGAGGATGTGAAGGACGACGGCAAGGATGATGATGATGATGATGGTGCAAATGATGATTCTAAGCAGAGTCGGAGCGAGAGGAAAAGCTGCAAGGCAATGTTGAAGTTGGGTATGAAGCCTGTTTCAGGTGTTAGCAGAGTGACCATCAAAAGAACCAAAAACATACTGTTTTTCGTCTCGAAACCCGATGTCTTCAAAAGCCCAAATTCCAAGACCTATATCATTTTCAGAGAGGATAAGATAGAGGATCTGAGCTCTCAATTGCAGACACAGGCCGCCCAGCAATTCAGAATGCCCGACATGGGATCTGTCATTGCAAAATCCTATAATGCAGGGTCCACTCCAGGTATCCCCCAACCGGCCGAGTATGAAGAGGAAGAGATCCACGAAACCGGAGTGGAGCCCAGGGACATTGATTTGGTGATGACACAACCAGGGGTGCCTAGGAGCAAGGCCGTCAAGGCTCTAAAGACTCACAGTGGAGACATTGTAAGTGCTATTATGGAGCTCACAACTTGA 663 46.91 MAPAQVVEAPEPDKESSLTPPSMDPTRSFRNGLIFHFILLQNLDESIVEDVKDDGKDDDDDDGANDDSKQSRSERKSCKAMLKLGMKPVSGVSRVTIKRTKNILFFVSKPDVFKSPNSKTYIIFREDKIEDLSSQLQTQAAQQFRMPDMGSVIAKSYNAGSTPGIPQPAEYEEEEIHETGVEPRDIDLVMTQPGVPRSKAVKALKTHSGDIVSAIMELTT 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55142430 55143697 + Conep01aG0107500.1 Cone1ag1027 431718

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1027 220 PANTHER NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED 9 220 IPR016641 GO:0005737(PANTHER)|GO:0005854(InterPro)|GO:0006612(PANTHER)|GO:0051082(PANTHER)
Cone1ag1027 220 ProSiteProfiles NAC A/B domain profile. 71 136 IPR002715 -
Cone1ag1027 220 Pfam NAC domain 74 124 IPR002715 -
Cone1ag1027 220 SMART NAC_2 74 130 IPR002715 -
Cone1ag1027 220 MobiDBLite consensus disorder prediction 51 76 - -
Cone1ag1027 220 CDD UBA_NAC_euk 183 219 - -
Cone1ag1027 220 Gene3D - 80 133 IPR038187 -
Cone1ag1027 220 FunFam Nascent polypeptide-associated complex (NAC), alpha subunit 81 133 - -
Cone1ag1027 220 Pfam HYPK UBA domain 180 219 IPR044034 -
Cone1ag1027 220 MobiDBLite consensus disorder prediction 1 25 - -
Cone1ag1027 220 Gene3D - 181 218 - -
Cone1ag1027 220 CDD NAC_NACA 85 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1027 K03626 - - rcu:8270842 246.514
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1027 Cone-Chr1:55142430 Cone3ag0506 Cone-Chr3:2510166 1.82E-55 dispersed
Cone1ag1027 Cone-Chr1:55142430 Cone5ag0734 Cone-Chr5:3161042 6.99E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g953 . . . . . . . . . . Cma02g01148 . Car02g00953 . . Cpe05g00575 . . . . . . . . Cla01g00001 . . . Clacu01g0001 Cmu01g0001 Cre09g2503 Cone1ag1027 Cone5ag0734 . . . . . . . . . Bda15g00799 . . . . . Cmo02g01184 . . . . . . . Bhi12g00740 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001063 2 3 1 2 2 2 3 2 2 2 3 3 5 2 2 5 3 6 3 2 1 2 3 2 2 2 3 5 2 2 79