Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1044 ATGAAGGAAGAAATTTTGGACAATTCTTCTTTTCACTTTGTTATCCAGCCCAGCAACCCTCCTGAGAGATCTCATCATCATCTTCTTCTTCTTCAATCTGAAATGGAGCAAGGTAAGAAGGGAGTAGTGGTCGCCAAGTTTTTTCAGTCTCAGAACCCTATCGAGCAGTTTCAAGCTAAGTACAAGGAGCTTGAGAATGGATTCAAGATGTGGTTGTCCAAGCAGTCTCTCCCAGTGGAGGCCGCCGTCGTCACTGCTACCAGCGCCGCACAGGGTGCTGCTATAGGTGGCTTCATGGGAACCCTGACAAATGACCCCTCTTCCTCTATGCCTGCCCCTCCCCCTCAGGCTGGACTTAATCCTCAAGCCATGGCTTCTTTCAAACAAGCTCAGGCTCTTGCTGGAGGTCCTTTGGTACAAGCTCGTAACTTTGCTGTAATGACTGGTGTCAATGCTGGAATATCTTGTGTCATGAAGAGATTGAGAGGCAAGGAGGATGTGCAGAGTAGTATGGTGGCTGCTTTTGGTTCTGGAGCATTGTTTTCACTGGTGAGCGGCATGGGAGGCCCAAATCAAGTAGGAAATGCTGCCACTTCAGGACTTTTCTTTGCACTTGTTCAAGGTGGACTTTACCAGTTGGGTAAAAAATTTTCTCAACCACCTGTTGAAGATATTTACTACTCTAAAACAAGGAGCATGTTAAGCAACCTTGGCCTCCAGAGCTATGAGAAGAACTTCAAGAAAGGCTTGTTAAACGATAACACGTTGCCTCTGCTCACGGACAGTGCGCTTAGAGATGTCAAAATCCCACCAGGACCAAGGCTTCTCATCCTGGATCAGATTCAAAGGGATCCTGAGCTTAAGAGGCGATGA 873 47.19 MKEEILDNSSFHFVIQPSNPPERSHHHLLLLQSEMEQGKKGVVVAKFFQSQNPIEQFQAKYKELENGFKMWLSKQSLPVEAAVVTATSAAQGAAIGGFMGTLTNDPSSSMPAPPPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISCVMKRLRGKEDVQSSMVAAFGSGALFSLVSGMGGPNQVGNAATSGLFFALVQGGLYQLGKKFSQPPVEDIYYSKTRSMLSNLGLQSYEKNFKKGLLNDNTLPLLTDSALRDVKIPPGPRLLILDQIQRDPELKRR 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55207243 55209980 + Conep01aG0109200.1 Cone1ag1044 431735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1044 290 CDD SAM_superfamily 232 283 - -
Cone1ag1044 290 PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22 50 282 IPR039175 GO:0008320(PANTHER)|GO:0009706(PANTHER)|GO:0042721(InterPro)|GO:0045036(PANTHER)|GO:0045039(InterPro)
Cone1ag1044 290 FunFam mitochondrial import inner membrane translocase subunit TIM22-like 231 290 - -
Cone1ag1044 290 Pfam SAM domain (Sterile alpha motif) 234 283 IPR001660 GO:0005515(InterPro)
Cone1ag1044 290 Pfam Tim17/Tim22/Tim23/Pmp24 family 81 204 - -
Cone1ag1044 290 Gene3D - 229 289 IPR013761 -
Cone1ag1044 290 SUPERFAMILY SAM/Pointed domain 224 284 IPR013761 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1044 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1044 Cone-Chr1:55207243 Cone5ag0754 Cone-Chr5:3235183 2.94E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g931 . Blo15g00003 . . . Bpe07g01106 . . . . Cma02g01149 Cma15g00993 . . . Cpe05g00574 . . . . . . . . . . . . . . . Cone1ag1044 Cone5ag0754 . . . Csa05g00015 Chy09g01465 . . . . . . . . . . . . . . . . . Cpe13g00341 . . . . . . . . . . . . . . . . . Cme09g02016
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007153 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 0 1 2 1 1 37