Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1048 ATGGAGACAGAGGTCAAGGAATCAAAGGATGTGAAAGGAGATAATACCAATACACTGCCATTTCATAAGCTGCTTAGCTATGCAGATGCATTGGATTGGGCATTAATGGCATTTGGAACACTGGGTTCAATTATACATGGAATGGCTCAACCCATTGGATATTTGTTACTCGGTAAAGCTTTAAATGCCTTTGGAAATAACATCAACGACACTGATGCTACGGTTAAAGCCATCAATAAGGTCGTTCCATTTGTTTGGTACATGGCAATCGCCACATTTCCTGCTGGAGTTCTAGAGATTGGATGTTGGATGTATGCAAGTGAAAGACAATTATCACGCCTACGCCTCGCATTCCTTCAATCAGTCCTTAGGCAAGAAATCGGAGCTTTTGACACCGACTTAACTAATGGAAAAATCATTACTGGAATCAGTAGTCACATGAGTATCATACAAGATGCAATAGGAGAAAAGTTGGGTCATTTTCTCTCAAGCTTTGCAACGTTCTTCTCTGGAATCTTGATTGCTGCAATATGCTGTTGGGAAGTGGCGCTGCTTACTTTCATGGTGGTGCCACTGATTCTAGTCATAGGAGCCACTTACACCAATAAAATGAACACTACATCAGCTGTCAAAATGATATACCATTCAGAAGCTACTTCCCTTGTTGAACAGACAGTATCACAGATAAGAACAGTATATGCATTTGTGGGAGAGAGTTGTTCGATAAAGTCCTTCTCAGAGTACATGGACAGGCTGATTTATATCAGCAGGGGGGAGGCCTTGATCAAGGGAATAGGAACAGGGATGTTCCAAATTGCAAGCTTTGGTTCTTGGGCTCTTATAGTATGGGTCGGGGCTGTTGTAGTCACCGCCCATCGGGCCACTGGAGGAGATATTTTAGCTGCAATAATGAGCATTCTCTTTGGAGCTATATCATTGACTTATGCTGCACCGGATATGCAAGTCTTCAATCAGGCAAAGGCGGCAGGGACAGAAGTATTTCAAGTTATTGAAAGAAAGCCGCTGATAGCTTACAGTTCAGAAGGAAAAACACTGGAGGGTGGTTTCAATGGCAACATTGACATTAAGAATGTCTCGTTTTCGTACCCGTCTCGTCCGAATAAACTGATACTTCAAGGATTTTCCTTGGCGATTCCTGCAGGGAAGACTGTTGCTTTAGTTGGTAGTAGTGGATGTGGAAAGAGTACTACTATCTCCCTTGTCTTGAGATTCTATGATGCCTCTAAAGGGGATATTTTCATCGACAACCATGACATCAAGGATTTGAATTTGAAGTTTCTAAGGCAAAAAATAGGAATGGTTTCCCAAGAGCCATCATTATTTGCTGGCACTATAAAAGATAACATCAAAGTAGGAAACATGGATGCAGATGATCAACAGATAGAGAATGCAGCAAAGATGGCAAATGCTTACTCTTTCATATCTCAACTACCAGACCATTACCTAACACAGGTAGGGCAGAGGGGAGTTCAATTATCAGGTGGGCAAAAACAGCGAATTGCAATAGCAAGAGCAATTCTCAAAAACCCTCCGATACTTTTTCTTGATGAGGCGACAAGTGCGCTTGATTCGGAGTCTGAGAAGTTGGTTCAAGATGCACTTGAAAAGGCTATGCAAGGAAGGACAGTGGTCTTAATTGCACATAGGATGTCAACTATTATCAATGCAGACATGATTGCAGTTGTCGAGAAGGGAAAAGTTGCAGAGACAGGAACACACCAGAGCTTGCTAGAGAGCAGCACATTCTATAATAGCTTATATACTATGCAGAGCCTAAAACCAACCCATTACTCAAGTGCTTCAAGTCCCTCTTTAGAACCTTCGAGTACCCATCAAAAGGTTCCATCTCAAGAGGACGTTGATCAGAGAAAATCCATAGAGGGAAAAGAAAAGGAGAAGGAATCTTACAGTCAATTGGAACAGAAAGACAGAGAAGGCACAACAGGAATATTCTTCAGAATCTGGTTTGGCTTGGGCAAGAGAGATTTTGCAATGACTGTGATTGGTTCTTTTGCAGCAGCTTTCTCTGGAATCTCAAAGCCTGTATTTGGATTCTTTATTATCACGATAGGAGTAACATACTATGACAGAGATGCAAAGGAGAAAGTTGGATGGTATTCACTTATCTTTGCCCTAATAGGACTTCTATCATTATTCAGTAACACATTGCAACATTACTTCTTTGGCGTGGTGGGAGAGAAGGCAATGAAAAACCTCAGGCAAGCTCTTTGCTCAGCTATACTATGCAACGAAATAGCTTGGTTTGAGAAACCCGAAAATAGCGTTGGTTCACTTACTTCAAGGATTATGAATGACACCTCCATGGTTAAAACAGTAATAGCAGATCGAATGTCTGTTATTGTCCAATGCGTCTCCTCAATATTGATTGCAACAATTGTCAGCATGGTTGCAGACTGGAGAATGGGCTTGGTAGCTTGGGCTGTAATGCCCTGCCACTTCATTGGTGGCCTAATACAAGCTAAATCCGCCAAAGGCTTTTCGGGTGACTCTGCTAGTGCACATTATGAACTCATTTCCCTTGCCTCAGAGTCAGCAACTAATATAAGAACCATTGCATCGTTCTGCCACGAAGAGGAAATAATTAGGAAGGCAAATAAATTGCTGGAAATTCCAAAGAGGAGGAGCAAGAAAGAAAGTATTAAGTATGGGATCATTCAAGGCATCTCCCTATGCTTATGGAACATCGCCCATGCCGTGGCTTTGCAGTACACAGCAGTTTTGGTTCATAAAGGACAGGCTACTTTTAAAAATGCCATAAGATCGTACCAGATTTTCTCTCTCACTGTACCTTCAATAACTGAATTATGGACACTAATTCCCACTGTGATTGCAGCCATTAAAATTTTAACTCCTGCATTTCAGACCCTTGATCGGAAGACTGAAATCCAGCCGGATACACCAGAAAGTTCACAACTGGGGAGAATCAAAGGGACAATACAGTTTCAAAATGTTCATTTCTGCTACCCATTAAGACCAGAAGTGACTGTGGTCAACAACTTCAGTTTACAAATCGAAGCTGGATCACGTGTGGCTTTTGTGGGGCCAAGTGGGGCAGGAAAGTCATCCCTTCTGACCCTTCTACTCAGATTTTATGATCCTAACAAAGGAAGGGTACTTATCGATGGGAAGGATATAAAAGAGTACAACCTAAGAAGGTTGAGGGCACAAATTGGGTTCGTGCAACAAGAGCCACTTCTTTTTAGCTCCTCGATCAAAGCCAACATCTGCTATGGGAATAATGGAGCTTCTGAAACTGAACTTGTGGAGGTATCAAGGGAAGCAAACATATATGAATTTATTAGTAACTTGCCCGATGGGTATGATACGGTGGTTGGAGAAAAGGGTTGCCAGCTATCAGGAGGACAAAAGCAGAGAATAGCCATTGCTAGAACTCTACTAAAGAAGCCAGCAATTTTGCTTCTAGATGAAGCAACAAGTGCATTAGATTCTGAGTCTGAGCGATCTGTAGTGAATGCTTTGCAATCAATAAATGAGAAAAATGGAGGCCTTTTGTCAAGAACCACACAGATAACAGTTGCCCACAGGCTCTCTACAGTGATAAATTCCGATACCATAGTTGTCATGGATAAGGGTGAGATTGTGGAGATGGGCTCCCACTCAACCCTGATGATGTCATCTGATGGAGTTTATGCAAAATTACTCCACCTACAGAGCTTTAAAGAATAG 3729 41.91 METEVKESKDVKGDNTNTLPFHKLLSYADALDWALMAFGTLGSIIHGMAQPIGYLLLGKALNAFGNNINDTDATVKAINKVVPFVWYMAIATFPAGVLEIGCWMYASERQLSRLRLAFLQSVLRQEIGAFDTDLTNGKIITGISSHMSIIQDAIGEKLGHFLSSFATFFSGILIAAICCWEVALLTFMVVPLILVIGATYTNKMNTTSAVKMIYHSEATSLVEQTVSQIRTVYAFVGESCSIKSFSEYMDRLIYISRGEALIKGIGTGMFQIASFGSWALIVWVGAVVVTAHRATGGDILAAIMSILFGAISLTYAAPDMQVFNQAKAAGTEVFQVIERKPLIAYSSEGKTLEGGFNGNIDIKNVSFSYPSRPNKLILQGFSLAIPAGKTVALVGSSGCGKSTTISLVLRFYDASKGDIFIDNHDIKDLNLKFLRQKIGMVSQEPSLFAGTIKDNIKVGNMDADDQQIENAAKMANAYSFISQLPDHYLTQVGQRGVQLSGGQKQRIAIARAILKNPPILFLDEATSALDSESEKLVQDALEKAMQGRTVVLIAHRMSTIINADMIAVVEKGKVAETGTHQSLLESSTFYNSLYTMQSLKPTHYSSASSPSLEPSSTHQKVPSQEDVDQRKSIEGKEKEKESYSQLEQKDREGTTGIFFRIWFGLGKRDFAMTVIGSFAAAFSGISKPVFGFFIITIGVTYYDRDAKEKVGWYSLIFALIGLLSLFSNTLQHYFFGVVGEKAMKNLRQALCSAILCNEIAWFEKPENSVGSLTSRIMNDTSMVKTVIADRMSVIVQCVSSILIATIVSMVADWRMGLVAWAVMPCHFIGGLIQAKSAKGFSGDSASAHYELISLASESATNIRTIASFCHEEEIIRKANKLLEIPKRRSKKESIKYGIIQGISLCLWNIAHAVALQYTAVLVHKGQATFKNAIRSYQIFSLTVPSITELWTLIPTVIAAIKILTPAFQTLDRKTEIQPDTPESSQLGRIKGTIQFQNVHFCYPLRPEVTVVNNFSLQIEAGSRVAFVGPSGAGKSSLLTLLLRFYDPNKGRVLIDGKDIKEYNLRRLRAQIGFVQQEPLLFSSSIKANICYGNNGASETELVEVSREANIYEFISNLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDSESERSVVNALQSINEKNGGLLSRTTQITVAHRLSTVINSDTIVVMDKGEIVEMGSHSTLMMSSDGVYAKLLHLQSFKE 1242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55218792 55223322 - Conep01aG0109600.1 Cone1ag1048 431739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1048 1242 SUPERFAMILY ABC transporter transmembrane region 664 978 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone1ag1048 1242 Pfam ABC transporter 1011 1160 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone1ag1048 1242 MobiDBLite consensus disorder prediction 604 648 - -
Cone1ag1048 1242 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 37 325 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone1ag1048 1242 FunFam ABC transporter B family member 1 983 1239 - -
Cone1ag1048 1242 CDD ABC_6TM_Pgp_ABCB1_D1_like 36 333 - -
Cone1ag1048 1242 Pfam ABC transporter transmembrane region 675 938 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone1ag1048 1242 Pfam ABC transporter transmembrane region 37 310 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone1ag1048 1242 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 674 958 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone1ag1048 1242 SMART AAA_5 387 573 IPR003593 GO:0016887(InterPro)
Cone1ag1048 1242 SMART AAA_5 1020 1213 IPR003593 GO:0016887(InterPro)
Cone1ag1048 1242 Gene3D - 349 605 IPR027417 -
Cone1ag1048 1242 MobiDBLite consensus disorder prediction 623 648 - -
Cone1ag1048 1242 CDD ABC_MTABC3_MDL1_MDL2 360 597 - -
Cone1ag1048 1242 PANTHER ABC TRANSPORTER B FAMILY 3 621 IPR039421 GO:0005887(PANTHER)|GO:0042626(PANTHER)
Cone1ag1048 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 597 IPR027417 -
Cone1ag1048 1242 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 993 1236 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone1ag1048 1242 Pfam ABC transporter 378 527 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone1ag1048 1242 Gene3D ABC transporter type 1, transmembrane domain 23 954 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone1ag1048 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 986 1238 IPR027417 -
Cone1ag1048 1242 ProSitePatterns ABC transporters family signature. 499 513 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone1ag1048 1242 CDD ABC_6TM_Pgp_ABCB1_D2_like 663 976 - -
Cone1ag1048 1242 CDD ABC_MTABC3_MDL1_MDL2 993 1238 - -
Cone1ag1048 1242 ProSitePatterns ABC transporters family signature. 1132 1146 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone1ag1048 1242 Gene3D - 984 1242 IPR027417 -
Cone1ag1048 1242 FunFam ABC transporter B family member 4 350 603 - -
Cone1ag1048 1242 MobiDBLite consensus disorder prediction 604 622 - -
Cone1ag1048 1242 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 596 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone1ag1048 1242 SUPERFAMILY ABC transporter transmembrane region 22 341 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1048 K05658 - - cit:102628093 1809.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1048 Cone-Chr1:55218792 Cone2ag0187 Cone-Chr2:985768 2.92e-312 dispersed
Cone1ag1048 Cone-Chr1:55218792 Cone16ag0856 Cone-Chr16:9101076 6.90e-313 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g928 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1048 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004410 1 4 1 0 1 2 1 2 2 2 1 2 1 2 2 1 2 1 1 2 1 1 1 1 1 2 2 1 1 1 43