Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1073 ATGGGGGACTCTAGGGGTATTCACGACCATATCTCCACCTCTCTTCCGCCGCGGTCGGGAGCTGGTATAATCAAGAGTGTCAGAATGGAGAACTTTATGTGCCATAGTAACTTGCAGATCGAGCTAGGCGAATGGGTTAACTTTATCACTGGTCAGAATGGAAGTGGAAAGAGTGCTATACTGACTGCTCTATGTGTTGCTTTCGGCTGCCGAGCTAAGGGAACTCAAAGGGCATCTACTTTGAAGGACTTTATAAAGACTGGTTGCGGCTATGCTGTTATTCGTGTTGAATTGAAAAATCAAGGGGAGGATGCTTTTAAGCCGGACGTATTTGGTGACGTTATTATTATTGAACGAAGGATATCTGAATCTACCAGCTCTACCACCTTGAAAGATTGCCAAGGAAAAAAGGTTTCCAATCGAAAAGATGAGCTTCGTGAGCTAGTGGAACATTTCAATATTGATGTTGAAAATCCATGTGTAATAATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCTGGAAATGACAGAGATAAATTTAAGTTTTTTTTCAAGGCTACTCTTCTTCAGCAAGTAGATGATCTCTTAAAAAACATTTTGGACCAACTGAGGTCCGCAAATGCTCTTGTTGATGATCTGGAGTCCACGATACGACCTGTAGAAAAGGAACTTAATGAATTGCAAGGAAAGATTAAAAGCATGGAGCATGTTGAAGAAATATCTCAGAAAGTCCAGCAGTTGAAGAAGAGGCTTGCTTGGTCATGGGTGTATGATGTTGACAAACAAATCGAACATCAGAGTACAAAGATCCGAAAGCTTAACGATCGTATACCTACTTGCCAAGAAAAAATCGACCACTTACTGGATTTGGTGGTAAAATTGAAAGATCGTCGCAGTAAGAAGAAAAGTCAGATTGCATACATGATGGAAAAGACCGCAGAAGTGCGAAGAATGAAGGATGAACTGCAAGAAACTCTTTCCTTGACAACAAAAGAGAAGCTTGGGCTTGAAGAAGAGCGTGAACGCAAATTGAGCCACATTCGGAAGATGGTGAACCGTGTTAGATTGATTGAACAACAAGTGTGTGATATTCATGAGCAGCACATGAAAAATACACAGGCTGAAGAATCTGAAATGGAGGAAGCGATGAAGGAACTTCAATCGGAGGTCTATGCTGCTGAGCAGACATTCAAAGAGTTGAAGGAAGAAGAGATTGCTTTACTAGAAAACCAACGTTATTGGAAGAGTGAACTAAAAAAACTTGCTGAGCAGATTGAAGACTATGACAAAAGGAGGCGTGAAATTTCTTTCTCGATTCGAGAGCTTGAGCAACATCAGACCAACAAGGTGACAGCTTTTGGGGGAGATAGAGTTATTCAGTTGTTACGTGCAATTGAGACACAACATCATAGATTTGAAAGACCACCAATTGGTCCAATTGGTGCCCATGTGAGCTTGAATGATGGGGACACATGGGCTCCTGCTGTTGAACATGCAATTGGAAAGTTGCTCAATGCTTTCATTGTGACAAGTCACAGAGATTCCCTTCTTTTAAGAAGATGTGCAAGGGAAGCTAACTATATGAACCTTAGTATTATCATATATGATTTTTCAACACCAAGGTTAAACATTCCGGCTCACTTGCTTCCTCAAACAAACCACCCTACTACTCTTTCAGCTATCCATTCTGAAAATCCTACCATCCTCAATGTTTTGGTAGATATGGGTGGTGCAGAGCGACAAGTTCTTGTTAGAGATTATAATGTTGGTAAAGCAGTTGCATTTGATCAGAGGGTCTCAAACCTCAAGGAGGTATTCACCTTAGATGGGTATAAAATGTTTTCTCGCGGTTCAGTTCAAACAATACTTCCCCCAGCTAAGAGGCTTAGAACAGGCCGACTGTATAGCTCCTTTGATAATCAGAGGAAGACTCTTGAAAGAGATGATTTGAATGTTAAAGAAGAATCTCAAGACTGCAGGAAGAGGAAAAGGGATGCAGAAGATGAACTTAAGGGTGTTGAAGAGAATCTAGATAGTGTAAAGAGGAGGTGTCATAGTGCTGAACGTTCTTTAATGTCTAAGAAGTTACAACTGCGAGATTTGGAGAATTCACATATTGCTGAAGCTAATTCATCTCCTGCTTCGGATGCTGATGACCTTTGTCAAGAAAAATCAAAAATCCAGGAGGACATACGTGAAAGTGAGGCATTGGTGGAAAGGCTCACACACAGAAAGATGCAAGCAGAAGCTAAGGTTAAGGATCTTACAGCATCATTTGAGAATCTATGTGAGTCGGCAAAAGGGGAAATTGATGCATTTGAAGAAGCAGAGGGAAATCTCATGCAGATTGAACGTGATCTACATTCTGCAGAAGAGGAAAAGGTTCATTATGAAGGTATTATGACTAACAAGGTCCTTCCTGATATTAAAGACTCTGAAAGAGAATATCAGAAAGTTCAAGAGCACCGGAAGGAGTGTTACAGAAAAGCTTCTATAATATGTCCAGAGAGTGATATTGAAGCTTTAGGGAGTTGGGATGGGAGCACTCCAGAACAACTCAGTGCCCAATTGACTAGACTAAATCAAAGACTTGAAAGCGAAAGCCGGCGATACTCTGAATCTATTGATGACCTAAGAATTCAGTACGAGAAGAAAGAACGCACAATATTAAGAAAGCAGCTGACTTACAAAGGATTCAGAGAAAAGTTGAAGGCTTGTGAGAAAGCCTTGGAATTGCGGATGAGCAAGTTTCAAAGGAATGCAAGTCTTTTAAAGCGTCAGTTGACTTGGCAGTTCAATGGCCATTTAAGAAAGAAAGGGATTAGTGGAAATATCAAAGTCAGTTATGAGGATAAGACCCTTTCAGTTGAGGTGAAGATGCCCCAAGATGCATCTAGCAGCACTGTTCGTGATACCAGAGGACTCTCAGGTGGAGAAAGGTCGTTTTCTACTTTATGTTTTGCACTAGCCCTTCATGAAATGACGGAAGCCCCATTTCGAGCAATGGATGAATTTGACGTGTTTATGGATGCAGTCAGTCGAAAAATTAGCCTAGACACCCTAATAGAATTTGCTTTGGCACAAGGATCTCAGTGGATATTCATCACACCTCATGATATCAGCATGGTAAAACAGGGGGAGAGGGTGAAGAAGCAGCAAATGGCAGCCCCTAGATCTTGA 3183 41.12 MGDSRGIHDHISTSLPPRSGAGIIKSVRMENFMCHSNLQIELGEWVNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCGYAVIRVELKNQGEDAFKPDVFGDVIIIERRISESTSSTTLKDCQGKKVSNRKDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDRDKFKFFFKATLLQQVDDLLKNILDQLRSANALVDDLESTIRPVEKELNELQGKIKSMEHVEEISQKVQQLKKRLAWSWVYDVDKQIEHQSTKIRKLNDRIPTCQEKIDHLLDLVVKLKDRRSKKKSQIAYMMEKTAEVRRMKDELQETLSLTTKEKLGLEEERERKLSHIRKMVNRVRLIEQQVCDIHEQHMKNTQAEESEMEEAMKELQSEVYAAEQTFKELKEEEIALLENQRYWKSELKKLAEQIEDYDKRRREISFSIRELEQHQTNKVTAFGGDRVIQLLRAIETQHHRFERPPIGPIGAHVSLNDGDTWAPAVEHAIGKLLNAFIVTSHRDSLLLRRCAREANYMNLSIIIYDFSTPRLNIPAHLLPQTNHPTTLSAIHSENPTILNVLVDMGGAERQVLVRDYNVGKAVAFDQRVSNLKEVFTLDGYKMFSRGSVQTILPPAKRLRTGRLYSSFDNQRKTLERDDLNVKEESQDCRKRKRDAEDELKGVEENLDSVKRRCHSAERSLMSKKLQLRDLENSHIAEANSSPASDADDLCQEKSKIQEDIRESEALVERLTHRKMQAEAKVKDLTASFENLCESAKGEIDAFEEAEGNLMQIERDLHSAEEEKVHYEGIMTNKVLPDIKDSEREYQKVQEHRKECYRKASIICPESDIEALGSWDGSTPEQLSAQLTRLNQRLESESRRYSESIDDLRIQYEKKERTILRKQLTYKGFREKLKACEKALELRMSKFQRNASLLKRQLTWQFNGHLRKKGISGNIKVSYEDKTLSVEVKMPQDASSSTVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLIEFALAQGSQWIFITPHDISMVKQGERVKKQQMAAPRS 1060
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55324773 55334445 - Conep01aG0112100.1 Cone1ag1073 431764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1073 1060 Coils Coil 810 830 - -
Cone1ag1073 1060 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 20 1058 - GO:0000724(PANTHER)|GO:0003684(PANTHER)|GO:0003697(PANTHER)|GO:0005634(PANTHER)|GO:0030915(PANTHER)|GO:0035861(PANTHER)
Cone1ag1073 1060 Coils Coil 197 231 - -
Cone1ag1073 1060 Coils Coil 862 889 - -
Cone1ag1073 1060 Gene3D - 23 174 IPR027417 -
Cone1ag1073 1060 Coils Coil 320 340 - -
Cone1ag1073 1060 Pfam RecF/RecN/SMC N terminal domain 24 1052 IPR003395 -
Cone1ag1073 1060 Coils Coil 657 705 - -
Cone1ag1073 1060 Coils Coil 366 404 - -
Cone1ag1073 1060 Coils Coil 774 801 - -
Cone1ag1073 1060 Gene3D - 721 1055 IPR027417 -
Cone1ag1073 1060 SUPERFAMILY Smc hinge domain 432 619 IPR036277 GO:0005515(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0051276(InterPro)
Cone1ag1073 1060 Coils Coil 718 759 - -
Cone1ag1073 1060 Coils Coil 908 928 - -
Cone1ag1073 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 1049 IPR027417 -
Cone1ag1073 1060 Gene3D - 187 355 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1073 Cone-Chr1:55324773 Cone20ag1052 Cone-Chr20:7357085 1.70E-11 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1073 K22804 - csv:101208493 1556.96