Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1073 ATGGGGGACTCTAGGGGTATTCACGACCATATCTCCACCTCTCTTCCGCCGCGGTCGGGAGCTGGTATAATCAAGAGTGTCAGAATGGAGAACTTTATGTGCCATAGTAACTTGCAGATCGAGCTAGGCGAATGGGTTAACTTTATCACTGGTCAGAATGGAAGTGGAAAGAGTGCTATACTGACTGCTCTATGTGTTGCTTTCGGCTGCCGAGCTAAGGGAACTCAAAGGGCATCTACTTTGAAGGACTTTATAAAGACTGGTTGCGGCTATGCTGTTATTCGTGTTGAATTGAAAAATCAAGGGGAGGATGCTTTTAAGCCGGACGTATTTGGTGACGTTATTATTATTGAACGAAGGATATCTGAATCTACCAGCTCTACCACCTTGAAAGATTGCCAAGGAAAAAAGGTTTCCAATCGAAAAGATGAGCTTCGTGAGCTAGTGGAACATTTCAATATTGATGTTGAAAATCCATGTGTAATAATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCTGGAAATGACAGAGATAAATTTAAGTTTTTTTTCAAGGCTACTCTTCTTCAGCAAGTAGATGATCTCTTAAAAAACATTTTGGACCAACTGAGGTCCGCAAATGCTCTTGTTGATGATCTGGAGTCCACGATACGACCTGTAGAAAAGGAACTTAATGAATTGCAAGGAAAGATTAAAAGCATGGAGCATGTTGAAGAAATATCTCAGAAAGTCCAGCAGTTGAAGAAGAGGCTTGCTTGGTCATGGGTGTATGATGTTGACAAACAAATCGAACATCAGAGTACAAAGATCCGAAAGCTTAACGATCGTATACCTACTTGCCAAGAAAAAATCGACCACTTACTGGATTTGGTGGTAAAATTGAAAGATCGTCGCAGTAAGAAGAAAAGTCAGATTGCATACATGATGGAAAAGACCGCAGAAGTGCGAAGAATGAAGGATGAACTGCAAGAAACTCTTTCCTTGACAACAAAAGAGAAGCTTGGGCTTGAAGAAGAGCGTGAACGCAAATTGAGCCACATTCGGAAGATGGTGAACCGTGTTAGATTGATTGAACAACAAGTGTGTGATATTCATGAGCAGCACATGAAAAATACACAGGCTGAAGAATCTGAAATGGAGGAAGCGATGAAGGAACTTCAATCGGAGGTCTATGCTGCTGAGCAGACATTCAAAGAGTTGAAGGAAGAAGAGATTGCTTTACTAGAAAACCAACGTTATTGGAAGAGTGAACTAAAAAAACTTGCTGAGCAGATTGAAGACTATGACAAAAGGAGGCGTGAAATTTCTTTCTCGATTCGAGAGCTTGAGCAACATCAGACCAACAAGGTGACAGCTTTTGGGGGAGATAGAGTTATTCAGTTGTTACGTGCAATTGAGACACAACATCATAGATTTGAAAGACCACCAATTGGTCCAATTGGTGCCCATGTGAGCTTGAATGATGGGGACACATGGGCTCCTGCTGTTGAACATGCAATTGGAAAGTTGCTCAATGCTTTCATTGTGACAAGTCACAGAGATTCCCTTCTTTTAAGAAGATGTGCAAGGGAAGCTAACTATATGAACCTTAGTATTATCATATATGATTTTTCAACACCAAGGTTAAACATTCCGGCTCACTTGCTTCCTCAAACAAACCACCCTACTACTCTTTCAGCTATCCATTCTGAAAATCCTACCATCCTCAATGTTTTGGTAGATATGGGTGGTGCAGAGCGACAAGTTCTTGTTAGAGATTATAATGTTGGTAAAGCAGTTGCATTTGATCAGAGGGTCTCAAACCTCAAGGAGGTATTCACCTTAGATGGGTATAAAATGTTTTCTCGCGGTTCAGTTCAAACAATACTTCCCCCAGCTAAGAGGCTTAGAACAGGCCGACTGTATAGCTCCTTTGATAATCAGAGGAAGACTCTTGAAAGAGATGATTTGAATGTTAAAGAAGAATCTCAAGACTGCAGGAAGAGGAAAAGGGATGCAGAAGATGAACTTAAGGGTGTTGAAGAGAATCTAGATAGTGTAAAGAGGAGGTGTCATAGTGCTGAACGTTCTTTAATGTCTAAGAAGTTACAACTGCGAGATTTGGAGAATTCACATATTGCTGAAGCTAATTCATCTCCTGCTTCGGATGCTGATGACCTTTGTCAAGAAAAATCAAAAATCCAGGAGGACATACGTGAAAGTGAGGCATTGGTGGAAAGGCTCACACACAGAAAGATGCAAGCAGAAGCTAAGGTTAAGGATCTTACAGCATCATTTGAGAATCTATGTGAGTCGGCAAAAGGGGAAATTGATGCATTTGAAGAAGCAGAGGGAAATCTCATGCAGATTGAACGTGATCTACATTCTGCAGAAGAGGAAAAGGTTCATTATGAAGGTATTATGACTAACAAGGTCCTTCCTGATATTAAAGACTCTGAAAGAGAATATCAGAAAGTTCAAGAGCACCGGAAGGAGTGTTACAGAAAAGCTTCTATAATATGTCCAGAGAGTGATATTGAAGCTTTAGGGAGTTGGGATGGGAGCACTCCAGAACAACTCAGTGCCCAATTGACTAGACTAAATCAAAGACTTGAAAGCGAAAGCCGGCGATACTCTGAATCTATTGATGACCTAAGAATTCAGTACGAGAAGAAAGAACGCACAATATTAAGAAAGCAGCTGACTTACAAAGGATTCAGAGAAAAGTTGAAGGCTTGTGAGAAAGCCTTGGAATTGCGGATGAGCAAGTTTCAAAGGAATGCAAGTCTTTTAAAGCGTCAGTTGACTTGGCAGTTCAATGGCCATTTAAGAAAGAAAGGGATTAGTGGAAATATCAAAGTCAGTTATGAGGATAAGACCCTTTCAGTTGAGGTGAAGATGCCCCAAGATGCATCTAGCAGCACTGTTCGTGATACCAGAGGACTCTCAGGTGGAGAAAGGTCGTTTTCTACTTTATGTTTTGCACTAGCCCTTCATGAAATGACGGAAGCCCCATTTCGAGCAATGGATGAATTTGACGTGTTTATGGATGCAGTCAGTCGAAAAATTAGCCTAGACACCCTAATAGAATTTGCTTTGGCACAAGGATCTCAGTGGATATTCATCACACCTCATGATATCAGCATGGTAAAACAGGGGGAGAGGGTGAAGAAGCAGCAAATGGCAGCCCCTAGATCTTGA 3183 41.12 MGDSRGIHDHISTSLPPRSGAGIIKSVRMENFMCHSNLQIELGEWVNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCGYAVIRVELKNQGEDAFKPDVFGDVIIIERRISESTSSTTLKDCQGKKVSNRKDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDRDKFKFFFKATLLQQVDDLLKNILDQLRSANALVDDLESTIRPVEKELNELQGKIKSMEHVEEISQKVQQLKKRLAWSWVYDVDKQIEHQSTKIRKLNDRIPTCQEKIDHLLDLVVKLKDRRSKKKSQIAYMMEKTAEVRRMKDELQETLSLTTKEKLGLEEERERKLSHIRKMVNRVRLIEQQVCDIHEQHMKNTQAEESEMEEAMKELQSEVYAAEQTFKELKEEEIALLENQRYWKSELKKLAEQIEDYDKRRREISFSIRELEQHQTNKVTAFGGDRVIQLLRAIETQHHRFERPPIGPIGAHVSLNDGDTWAPAVEHAIGKLLNAFIVTSHRDSLLLRRCAREANYMNLSIIIYDFSTPRLNIPAHLLPQTNHPTTLSAIHSENPTILNVLVDMGGAERQVLVRDYNVGKAVAFDQRVSNLKEVFTLDGYKMFSRGSVQTILPPAKRLRTGRLYSSFDNQRKTLERDDLNVKEESQDCRKRKRDAEDELKGVEENLDSVKRRCHSAERSLMSKKLQLRDLENSHIAEANSSPASDADDLCQEKSKIQEDIRESEALVERLTHRKMQAEAKVKDLTASFENLCESAKGEIDAFEEAEGNLMQIERDLHSAEEEKVHYEGIMTNKVLPDIKDSEREYQKVQEHRKECYRKASIICPESDIEALGSWDGSTPEQLSAQLTRLNQRLESESRRYSESIDDLRIQYEKKERTILRKQLTYKGFREKLKACEKALELRMSKFQRNASLLKRQLTWQFNGHLRKKGISGNIKVSYEDKTLSVEVKMPQDASSSTVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLIEFALAQGSQWIFITPHDISMVKQGERVKKQQMAAPRS 1060
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55324773 55334445 - Conep01aG0112100.1 Cone1ag1073 431764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1073 1060 Coils Coil 810 830 - -
Cone1ag1073 1060 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 20 1058 - GO:0000724(PANTHER)|GO:0003684(PANTHER)|GO:0003697(PANTHER)|GO:0005634(PANTHER)|GO:0030915(PANTHER)|GO:0035861(PANTHER)
Cone1ag1073 1060 Coils Coil 197 231 - -
Cone1ag1073 1060 Coils Coil 862 889 - -
Cone1ag1073 1060 Gene3D - 23 174 IPR027417 -
Cone1ag1073 1060 Coils Coil 320 340 - -
Cone1ag1073 1060 Pfam RecF/RecN/SMC N terminal domain 24 1052 IPR003395 -
Cone1ag1073 1060 Coils Coil 657 705 - -
Cone1ag1073 1060 Coils Coil 366 404 - -
Cone1ag1073 1060 Coils Coil 774 801 - -
Cone1ag1073 1060 Gene3D - 721 1055 IPR027417 -
Cone1ag1073 1060 SUPERFAMILY Smc hinge domain 432 619 IPR036277 GO:0005515(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0051276(InterPro)
Cone1ag1073 1060 Coils Coil 718 759 - -
Cone1ag1073 1060 Coils Coil 908 928 - -
Cone1ag1073 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 1049 IPR027417 -
Cone1ag1073 1060 Gene3D - 187 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1073 K22804 - - csv:101208493 1556.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1073 Cone-Chr1:55324773 Cone20ag1052 Cone-Chr20:7357085 1.70E-11 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone20ag1052 . 1 1024 Structural Maintenance of Chromosomes family AT5G15920 67.2 0.0e+00 1336.6
Cone1ag1073 . 18 1060 Structural Maintenance of Chromosomes family AT5G07660 59.5 0.0e+00 1171.4
Cone1ag1073 . 18 1060 Structural Maintenance of Chromosomes family AT5G61460 62.8 0.0e+00 1246.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010088 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 32