Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1095 ATGTCGAACAATGTTTCCAAGCTCATATGTAATGGTTTAGCTATTAATTACAACGATTCACTAAACAGCAGCACTAGTTCTCTACCTAATTATAAAGAGGGTTTTCCCAGTTGGGTTTCGGGTGGAGACAGGAAGTTGTTGCAATCATCATCTCCCAGGGCAAATATTGTGGTGGCCCAAGATGGGTCCGGGAATTACAGGACCGTTCAGGCAGCAGTGAATGCGGCCGAGAAGAGGAGTGGGAGTGGGAGGTTTGTTATACATGTGAAGAGAGGGACAGACAAGGAGAATGTGGTGATAAAGTCGAAAAATATAATGTTTGCTGGCGATGGATTGAAGTATACTATCATAACTGGGAGCAGAAGTGTTGTAGGTGGTTCTACAACTTTCAATTCTGCAACTGTTGCGGTGACCGGAGGAGGATTTATAGCCCGTGGTATCACTTTTCGTAACACCGCGGGTCCTCAAAACCACCAAGCTGTCGCTCTCCGATCAGGTGCTGATCTCTCAGTCTTCTATCGATGCGGTTTTGAAGGATACCAAGACACCTTATACGTCCATTCACAAAGACAATTCTACAAAGAATGTTACATTTACGGCACAGTAGACTTTGTCTTCGGAAACTCAGCTGCTGTGTTACAAAACTGCATGATTTATGCTCGTAAGCCTAGCTCTGGTCAGAAAAATACTATCACAGCACAAGGCCGAACTGACCCTAACCAGAACACAGGAATTTCGATACATAATTCTAGAGTTATGGCAACCTCGGATCTTAGATCGGTGCAAGGCATGGTTTCGACCTATTTGGGAAGACCTTGGAAGACTTACTCACGGACCGTTTTCTTGCAAACTTATCTCGATAGATTGATTAACCCGGCAGGTTGGTTGGAATGGGATGGTGATTTTGCACTAAGTACATTGTATTACGGAGAGTATAAGAACATGGGACCCGGTTCGTCAACCAGCCGGAGAGTAAAGTGGAAGGGGTACCGTGTTATAAGTAGTGCAACCGAAGCATCAAAGTCACCGTTCAAAATTTCATTGTCGGAAAGTCATGGTTGCCAGGTACTGGTGTGCCTTTTACTTCCGGTCTATAATTTCATAATGAAAGAAACCCTCCATTGTTCACCTCATGATATATACTTACATTCTTTGTTTGAAAATTCAATTGAATTCTTTTGTGCTGTATAA 1191 43.32 MSNNVSKLICNGLAINYNDSLNSSTSSLPNYKEGFPSWVSGGDRKLLQSSSPRANIVVAQDGSGNYRTVQAAVNAAEKRSGSGRFVIHVKRGTDKENVVIKSKNIMFAGDGLKYTIITGSRSVVGGSTTFNSATVAVTGGGFIARGITFRNTAGPQNHQAVALRSGADLSVFYRCGFEGYQDTLYVHSQRQFYKECYIYGTVDFVFGNSAAVLQNCMIYARKPSSGQKNTITAQGRTDPNQNTGISIHNSRVMATSDLRSVQGMVSTYLGRPWKTYSRTVFLQTYLDRLINPAGWLEWDGDFALSTLYYGEYKNMGPGSSTSRRVKWKGYRVISSATEASKSPFKISLSESHGCQVLVCLLLPVYNFIMKETLHCSPHDIYLHSLFENSIEFFCAV 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55447486 55449333 + Conep01aG0114300.1 Cone1ag1095 431786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1095 396 Pfam Pectinesterase 55 341 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone1ag1095 396 SUPERFAMILY Pectin lyase-like 50 340 IPR011050 -
Cone1ag1095 396 ProSitePatterns Pectinesterase signature 2. 198 207 IPR033131 -
Cone1ag1095 396 Gene3D - 49 355 IPR012334 -
Cone1ag1095 396 PANTHER PECTINESTERASE 3 341 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone1ag1095 396 FunFam Pectinesterase 49 349 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1095 Cone-Chr1:55447486 Cone5ag0802 Cone-Chr5:3450694 1.81E-230 dispersed
Cone1ag1095 Cone-Chr1:55447486 Cone1ag1096 Cone-Chr1:55449667 8.18E-138 tandem
Cone1ag1095 Cone-Chr1:55447486 Cone12ag0384 Cone-Chr12:2206079 3.08E-38 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1095 K01051 - csv:101216005 535.413