Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1096 ATGGTGATCGCTATGAGTATCATCAAAACCAACTTGCTTCTCCTAATTTTCGTAGCGTGCTTCTTCTCAGTCTTGTTACCGGCCGAATCAAGAAGCACGAGATATAAACGCAACATAGAAAAATGGTGCGCCACCACCCCGCATCCCGAGCCGTGCAAATACTTCATCTCTCACACTCACTCCCACCACAAGTTCAACCCGAAACATCGGTCGGAGTTTCGAGAGATATCAGTTCGAATCTCGTTAGAACGAGCCGTTGATGCCCTCAAATTCACGATGAAATTTGGCCAAAACAATGAAAATGCCCGCCAGGTAGCCGCCTGGTCCGACTGCTTAAAACTCTACCGCAACACAATTCTCCAGTTAAATCAAACCCTTCAAGGCCTAACCAATTACGGAAACCTGTCTTGCACGAATTTTGATGCGCAGACATGGCTTAGCACTGCTCTCACGAACATCGCAACATGCCGCACAAGCGGTGCGGATCTAAACGTTACGCATTTTATTGACCCGATCACGACATCAAACAACGTGTCGGAGCTAATTAGCAATAGTTTGGCAGTTAACGGCATCATGCTAGGGCAAAAGAGTATTTATACAACTAATGAGGCTTGTAGTCTCGGCACGGAGGAGTACTTTCCGGTCTGGGTTTCCAAGGGTGAGAGGAAGTTGTTGCAGAGTTGGACGGTGAAGGCGGATGTGGTGGTGGCGAAAGATGGATCGGGGAATTACAAGACGGTCCAGGCAGCAATTGATGCGGCAGCGAGGAGGAAAGGGGGAGGGAAGTTTGTTATTTACATAAAGAGAGGTGTTTATAAGGAAAATATTGAGGTTGGGAACAATAATATTAAGGTTGTCATGATTGGGGATGGAATGAAGAATACTATAATCACTAGTGGTAGGAGTGTTGGAGGGGGTTATACCACCTATAGTTCTGCTACTGCTGGCATAGACGGAGTAGGCTTTATGGCCAGAGGCATTACGTTCATGAACACGGCCGGTCCGAAAATGGGTCAAGCCGTGGCACTCCGATCATCATCCGATCTTTCGGTCTTTTACAAATGTGCCTTCCAAGGTTACCAAGACACCCTAATGGTCCTTTCACAAAGACAGTTCTATAGAGAATGTTACATCTACGGCACTATTGACTTCATCTTTGGTAATGCAGCGGTCGTTTTCCAAAATTGCCTCATCTATGTTAAAAGGCCGTTAAAGGGCCAAGTTAACGTCATCACGGCCCAAGGTCGAGATGACCCATATCAAAATACAGGGATTGCTCTCCACGGTTGTCAGGTCCGAGCTGCCCCGGACCTGAAGCCCGTGATGGGCTTATTCAAGACTTACTTGGGCCGGCCTTGGAGACAATACTCTCGGACTGTCGTACTTAAAAGTTATATCGATAGCTTGGTGAGCCCAGTGGGCTGGTTACCATGGGACAAAAGCTCGTTTGGTCTTGATACTTTGTATTATGGGGAGTACCAGAATTTTGGGCCTAGGGCGTCGACTAAGTACAGAGTGAGGTGGAAGGGGTTTCATGTGATCACAAGCCCAACAGTAGCATCTAGTTTTACGGTGGCCCGTCTTATTGCGGGCCAGTCGTGGTTGCCAGGTACTGGAGTGCCATTCAGGCCCAATTTGTAA 1641 47.59 MVIAMSIIKTNLLLLIFVACFFSVLLPAESRSTRYKRNIEKWCATTPHPEPCKYFISHTHSHHKFNPKHRSEFREISVRISLERAVDALKFTMKFGQNNENARQVAAWSDCLKLYRNTILQLNQTLQGLTNYGNLSCTNFDAQTWLSTALTNIATCRTSGADLNVTHFIDPITTSNNVSELISNSLAVNGIMLGQKSIYTTNEACSLGTEEYFPVWVSKGERKLLQSWTVKADVVVAKDGSGNYKTVQAAIDAAARRKGGGKFVIYIKRGVYKENIEVGNNNIKVVMIGDGMKNTIITSGRSVGGGYTTYSSATAGIDGVGFMARGITFMNTAGPKMGQAVALRSSSDLSVFYKCAFQGYQDTLMVLSQRQFYRECYIYGTIDFIFGNAAVVFQNCLIYVKRPLKGQVNVITAQGRDDPYQNTGIALHGCQVRAAPDLKPVMGLFKTYLGRPWRQYSRTVVLKSYIDSLVSPVGWLPWDKSSFGLDTLYYGEYQNFGPRASTKYRVRWKGFHVITSPTVASSFTVARLIAGQSWLPGTGVPFRPNL 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55449667 55451491 - Conep01aG0114400.1 Cone1ag1096 431787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1096 546 CDD PMEI-like_3 42 189 - -
Cone1ag1096 546 SMART PMEI_2 34 188 IPR006501 GO:0004857(InterPro)
Cone1ag1096 546 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 192 IPR035513 -
Cone1ag1096 546 Pfam Plant invertase/pectin methylesterase inhibitor 38 188 IPR006501 GO:0004857(InterPro)
Cone1ag1096 546 Pfam Pectinesterase 233 531 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone1ag1096 546 FunFam Pectinesterase 227 546 - -
Cone1ag1096 546 NCBIfam pectinesterase inhibitor domain 14 190 IPR006501 GO:0004857(InterPro)
Cone1ag1096 546 PANTHER PECTINESTERASE 10 536 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone1ag1096 546 ProSitePatterns Pectinesterase signature 1. 259 278 IPR018040 -
Cone1ag1096 546 SUPERFAMILY Pectin lyase-like 228 543 IPR011050 -
Cone1ag1096 546 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 192 IPR035513 -
Cone1ag1096 546 ProSitePatterns Pectinesterase signature 2. 378 387 IPR033131 -
Cone1ag1096 546 Gene3D - 227 546 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1096 Cone-Chr1:55449667 Cone5ag0803 Cone-Chr5:3453279 0 dispersed
Cone1ag1095 Cone-Chr1:55447486 Cone1ag1096 Cone-Chr1:55449667 8.18E-138 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1096 K01051 - cit:102611144 682.174