Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1119 ATGGGAAGAGGGAGAGTTGTGTTGGAGAGAATAGAGAACAAGATCAACAGGCAAGTGACCTTCTCGAAGAGGAGGAATGGATTGCTGAAGAAGGCTTACGAGCTTTCCGTACTCTGTGATGCTCAGATTGCAGTCATCATCTTCTCTAGCCGTGGAAAGCTCTCTGAATTTGGCAGCACTGACATGAACAAGATCCTCGAATGGTACCGGCGGGCACATTATACTCCCGAAGGCAACACCGTCGATGCTGACACGCAGGGCCTTTACCAAGAGGTCTCAAGATTAAAGGCTGAATATGAATCTCTTCAGAGGTCCCAAAGGCATTTGCTGGGACAAGATATCGAACCACTTAATCTGACAGAGCTGCAAAATCTGGAGAAACAGTTAGATAGAACTCTCTCACGAGCTAGACAGCGAAAGACACAAATGATGCTAGACCGATTAGACGATTTACGGAAAACGGAGCGGGACCTTGCAGAATTGAATAATAAACTCCAGTCGAAGCTTGAGGAAGTAGTACATGAACCATTACAAGCTATTCAAGCTGGTCAATGGGAACGTAGCAGCATGATGCACAATCACGTGTGGTCTAGGGTGCACCCTTCACGAGCCAATCATGTTGGATCAGAACCAAGCTTAGGACGAGGTGAAATTGAGGACGAAGAAGATGCAGGAGAAGCAAGGATTATGGGAGGAGGGAACCGGAGCGCGCTTCACCAGGCCGCCCGGACCGCTTCTTTCATTTGA 747 48.06 MGRGRVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAQIAVIIFSSRGKLSEFGSTDMNKILEWYRRAHYTPEGNTVDADTQGLYQEVSRLKAEYESLQRSQRHLLGQDIEPLNLTELQNLEKQLDRTLSRARQRKTQMMLDRLDDLRKTERDLAELNNKLQSKLEEVVHEPLQAIQAGQWERSSMMHNHVWSRVHPSRANHVGSEPSLGRGEIEDEEDAGEARIMGGGNRSALHQAARTASFI 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55564708 55567596 + Conep01aG0116800.1 Cone1ag1119 431810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1119 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone1ag1119 248 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone1ag1119 248 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone1ag1119 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone1ag1119 248 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone1ag1119 248 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone1ag1119 248 Coils Coil 119 142 - -
Cone1ag1119 248 MobiDBLite consensus disorder prediction 203 223 - -
Cone1ag1119 248 Gene3D - 13 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone1ag1119 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone1ag1119 248 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Cone1ag1119 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone1ag1119 248 Coils Coil 144 171 - -
Cone1ag1119 248 Pfam K-box region 85 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone1ag1119 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone1ag1119 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone1ag1119 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone1ag1119 248 Coils Coil 85 105 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1119 Cone-Chr1:55564708 Cone6ag0933 Cone-Chr6:4798470 1.20E-38 dispersed
Cone15ag0345 Cone-Chr15:1605768 Cone1ag1119 Cone-Chr1:55564708 2.82E-19 transposed
Cone16ag0224 Cone-Chr16:1634376 Cone1ag1119 Cone-Chr1:55564708 1.92E-43 transposed
Cone1ag1119 Cone-Chr1:55564708 Cone18ag1146 Cone-Chr18:8262260 8.54E-13 wgd
Cone1ag1119 Cone-Chr1:55564708 Cone8ag0337 Cone-Chr8:1930592 3.37E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45487 PF06325 PrmA 2.50E-13 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1119 K09264 - vvi:100232868 253.832