Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1140 ATGGCGGATCCTCCTTCAGATCACGTGCAAAATCCAGAGCAAAATGCCAATACATTGCGCCTACAACCACCGCCGCAATCACAACGGCCACTACCCATACGAATTCCATATCAGATTGGTCCAGATTCTAATCCTTCATTTTATGTATTGAATAGGACATCAACTCACGATGACCCGTCACCCTGGCCCGTTCAATCCCCTGGCGGGTCGTCGTCATCATCTACGGGCCATCCCGCTTCTCCTACAATGTCCAGAAGGCATCCCAAGTATCGCGGAATCCGATGTCGGAGTGGAAAATGGGTGTCAGAAATAAGAGAGCCACGTAAAACCACACGCATTTGGCTCGGAACATACCCTACACCGGAAATGGCAGCAGCTGCCTATGATGTGGCGGCACTTTCCCTAAAAGGCCCCGACACTGTCTTGAACTTTCCCAATGCCATACTTTCCTACCAGATACCGGGTTCAACTTCAGCAAGCGACATACGGGCCGCTGCAGCCCGCGCGGCAGCGGCCTGGATAGGTTTTGGAGAAAGCTCGAAAATGGGCCAGCCTGAAAAAGAGGGAAAGTCGTCGATTAGTAACGATGGGGATCTGGTTGGATCGGCGGATCATCATGAGGAGTTTATGGACGAGGAAGAGTTACTGAATATGCCGAATTTGTTGGTTGATATGGCGGAAGGAATGCTCGTTAGCCCTCCGAGGATTAAATCTTTACCATCGGACGATTCGCTGGAAAATTCCGACGGAGACAGGCTATGGAATTATAGTACTTAA 777 50.32 MADPPSDHVQNPEQNANTLRLQPPPQSQRPLPIRIPYQIGPDSNPSFYVLNRTSTHDDPSPWPVQSPGGSSSSSTGHPASPTMSRRHPKYRGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALSLKGPDTVLNFPNAILSYQIPGSTSASDIRAAAARAAAAWIGFGESSKMGQPEKEGKSSISNDGDLVGSADHHEEFMDEEELLNMPNLLVDMAEGMLVSPPRIKSLPSDDSLENSDGDRLWNYST 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55645962 55647493 + Conep01aG0118900.1 Cone1ag1140 431831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1140 258 CDD AP2 88 147 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1140 258 SMART rav1_2 89 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1140 258 MobiDBLite consensus disorder prediction 44 81 - -
Cone1ag1140 258 MobiDBLite consensus disorder prediction 1 91 - -
Cone1ag1140 258 Pfam AP2 domain 88 137 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1140 258 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 72 224 IPR051032 -
Cone1ag1140 258 MobiDBLite consensus disorder prediction 180 202 - -
Cone1ag1140 258 FunFam Ethylene-responsive transcription factor 2 89 146 - -
Cone1ag1140 258 ProSiteProfiles AP2/ERF domain profile. 89 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1140 258 MobiDBLite consensus disorder prediction 8 24 - -
Cone1ag1140 258 Gene3D AP2/ERF domain 89 147 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1140 258 MobiDBLite consensus disorder prediction 233 258 - -
Cone1ag1140 258 SUPERFAMILY DNA-binding domain 89 146 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1140 Cone-Chr1:55645962 Cone6ag0748 Cone-Chr6:3795049 1.41E-53 dispersed
Cone1ag1140 Cone-Chr1:55645962 Cone1ag1141 Cone-Chr1:55651833 4.42E-33 tandem
Cone1ag1140 Cone-Chr1:55645962 Cone14ag0113 Cone-Chr14:525640 8.57E-35 wgd
Cone1ag1140 Cone-Chr1:55645962 Cone15ag0118 Cone-Chr15:569337 5.72E-34 wgd
Cone1ag1140 Cone-Chr1:55645962 Cone5ag0847 Cone-Chr5:3631525 1.15E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45489 PF00808 CBFD_NFYB_HMF 3.50E-19 CL0012 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1140 - - - 0.0