Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone1ag1141 | ATGGATACTAATTTCCTTAGCTCTAGTTACGATTACCATTTGAGCTCGGAGAGTAGCAGTACTAGCGGTCGGAAGGCGAAATTTTCAGACGAGGAAGTTATGCTCTTGGCATCGAGAAATCCGAAGAAGATAGCGGGAAGGAAGAAGTTTACGGAGACACGCCATCCTATTTACAGGGGAGTGAGGAGGAGGAATTCGAGCAAGTGGGTTTGCGAGGTGAGAGAGCCGAACAAGAAGACGAGGATTTGGTTGGGGACTTTTCCGACTGCTGAGATGGCAGCTCGGGCTCATGACGTCGCGGCGATAGCCCTGAGGGGTCGGTCGGCTTGTTTAAATTTTGCTGATTCGGCATGGAGGTTGCCGGTGCCGGCATCGTGCGATGCTAAGGATATTCAGAAGGCAGCAGCGGAGGCAGCGGAAGGTCTCCAGCGTCCAGAAGTGGTGGAGGATAGTTGCGGAGTGGGCTCGGTGGGTGATCGTGATGATGAGCAATTGGAAGATGTGTCTTTTATGGATGAAGAAATGGTTTTCGGGATGCCTGGATTGTTAGTCAATATGGCTGAGGGATTGCTTTTGCCTCCACCTCAGTGCGATGGTTATGTCGATGTCGAATCCGACTTCGACATGTCGTTGTGGAATCATTCAGTTTGA | 651 | 50.84 | MDTNFLSSSYDYHLSSESSSTSGRKAKFSDEEVMLLASRNPKKIAGRKKFTETRHPIYRGVRRRNSSKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSAWRLPVPASCDAKDIQKAAAEAAEGLQRPEVVEDSCGVGSVGDRDDEQLEDVSFMDEEMVFGMPGLLVNMAEGLLLPPPQCDGYVDVESDFDMSLWNHSV | 216 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 55651833 | 55652483 | + | Conep01aG0119000.1 | Cone1ag1141 | 431832 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone1ag1141 | 216 | PRINTS | Ethylene responsive element binding protein signature | 80 | 96 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag1141 | 216 | PRINTS | Ethylene responsive element binding protein signature | 58 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag1141 | 216 | FunFam | Ethylene-responsive transcription factor 2 | 56 | 115 | - | - | |
Cone1ag1141 | 216 | Pfam | AP2 domain | 57 | 106 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag1141 | 216 | SUPERFAMILY | DNA-binding domain | 57 | 116 | IPR016177 | GO:0003677(InterPro) | |
Cone1ag1141 | 216 | CDD | AP2 | 56 | 116 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag1141 | 216 | SMART | rav1_2 | 57 | 120 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag1141 | 216 | Gene3D | AP2/ERF domain | 57 | 115 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag1141 | 216 | ProSiteProfiles | AP2/ERF domain profile. | 57 | 114 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag1141 | 216 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 15 | 213 | IPR045277 | GO:0003700(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone1ag1141 | Cone-Chr1:55651833 | Cone5ag0848 | Cone-Chr5:3637109 | 5.58E-129 | dispersed | |
Cone1ag1140 | Cone-Chr1:55645962 | Cone1ag1141 | Cone-Chr1:55651833 | 4.42E-33 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45490 | PF04563 | RNA_pol_Rpb2_1 | 2.10E-31 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone1ag1141 | - | - | - | 0.0 |