Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1141 ATGGATACTAATTTCCTTAGCTCTAGTTACGATTACCATTTGAGCTCGGAGAGTAGCAGTACTAGCGGTCGGAAGGCGAAATTTTCAGACGAGGAAGTTATGCTCTTGGCATCGAGAAATCCGAAGAAGATAGCGGGAAGGAAGAAGTTTACGGAGACACGCCATCCTATTTACAGGGGAGTGAGGAGGAGGAATTCGAGCAAGTGGGTTTGCGAGGTGAGAGAGCCGAACAAGAAGACGAGGATTTGGTTGGGGACTTTTCCGACTGCTGAGATGGCAGCTCGGGCTCATGACGTCGCGGCGATAGCCCTGAGGGGTCGGTCGGCTTGTTTAAATTTTGCTGATTCGGCATGGAGGTTGCCGGTGCCGGCATCGTGCGATGCTAAGGATATTCAGAAGGCAGCAGCGGAGGCAGCGGAAGGTCTCCAGCGTCCAGAAGTGGTGGAGGATAGTTGCGGAGTGGGCTCGGTGGGTGATCGTGATGATGAGCAATTGGAAGATGTGTCTTTTATGGATGAAGAAATGGTTTTCGGGATGCCTGGATTGTTAGTCAATATGGCTGAGGGATTGCTTTTGCCTCCACCTCAGTGCGATGGTTATGTCGATGTCGAATCCGACTTCGACATGTCGTTGTGGAATCATTCAGTTTGA 651 50.84 MDTNFLSSSYDYHLSSESSSTSGRKAKFSDEEVMLLASRNPKKIAGRKKFTETRHPIYRGVRRRNSSKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSAWRLPVPASCDAKDIQKAAAEAAEGLQRPEVVEDSCGVGSVGDRDDEQLEDVSFMDEEMVFGMPGLLVNMAEGLLLPPPQCDGYVDVESDFDMSLWNHSV 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55651833 55652483 + Conep01aG0119000.1 Cone1ag1141 431832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1141 216 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1141 216 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1141 216 FunFam Ethylene-responsive transcription factor 2 56 115 - -
Cone1ag1141 216 Pfam AP2 domain 57 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1141 216 SUPERFAMILY DNA-binding domain 57 116 IPR016177 GO:0003677(InterPro)
Cone1ag1141 216 CDD AP2 56 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1141 216 SMART rav1_2 57 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1141 216 Gene3D AP2/ERF domain 57 115 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1141 216 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag1141 216 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 15 213 IPR045277 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1141 Cone-Chr1:55651833 Cone5ag0848 Cone-Chr5:3637109 5.58E-129 dispersed
Cone1ag1140 Cone-Chr1:55645962 Cone1ag1141 Cone-Chr1:55651833 4.42E-33 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45490 PF04563 RNA_pol_Rpb2_1 2.10E-31 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1141 - - - 0.0