Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1147 ATGAGCAGATACTTAAACTTCAAACTTTTGTTTCTCGTTTTCTCTGTTTTCGGCCTGTACTTTTTGAGCTCCATTAATGGCGTCTCAGTCCGGAAGCAAGAAAACCCAGAGAGAGAAAACTTGCTTTCATTCAAAGCAGTTCTTGAAAATCCTCACCTACTTTCTTCATGGAACCCGTCACTCCCACACTGTACCTGGTTAGGCGTCTCTTGCCGACTCGGTCGAGTTATTCAACTTGTTCTTCCATCTCTGAAACTTAAAGGACCTCTCTCTCCCTCCATTTTCAACCTCTCCAACCTCACCGTCCTGGACCTTTCCAGTAACCTTCTCTACGGTAAATTCCCACCTGAGATATCCAGCCTTCAACTCCTGAATGAGCTCTCACTTACCGGAAACCGATTCTCCGGCAAGTTTCCGAGTGAATTTACTGAGTTGATTCAGTTAGAAACGCTAAAACTCGGGTTTAACTCCTTCACCGGAAACATTCCGCGGGAGCTCGGGTCTTTGAAACAGCTTCGAACCCTCGACCTATCCGGAAACGGCTTCTCCGGAGGCCTACCGGACCACATCGGAAACTTGACCCAGCTCCGGTTTCTTGACCTTGGCAGCAACCTCTTAGCAGGTTCACTCCCATTAACCCTCTTCTCTAATCTTCGATCTTTAACTTCCTTAGACATTTCAAATAACACATTTTCAGGCTCAATCCCGCCTGAAATTGGCAACCTGAAAAACCTCACCAACCTATATATCAGCACAAATCACTTTTCCGGTCCTTTGCCCCGTGAAATTGGTAACCTATCATTGCTTGAAAACTTCTTCGCACCAAGTTGTTTTATAACTGGTCCATTGCCTAATGAACTGTCCAACTTAAAATCACTTAGCGAACTTGACCTTTCATATAACCCACTCAAGTGCTCTATCCCAAAATCCATAGGCAAGTTGCAGAAATTGACAATACTAAATCTTTGCTATGCTGAGCTTAATGGGTCGATTCCCTTAGAGCTTGGAAAGTGTAGAAACTTGAAAGCATTGACTCTCTCGTTCAATTCTCTATCTGGGTTGTTGCCTGAAGAGCTTTCTGAGCTTCCCATGTTGACATTTTCTGCTGAAAAGAATCAGCTTTCTGGGCCATTACCTCCTTGGCTCGGGAAGTGGAATCAGATTGATTCTCTTTTGCTTTCAGGTAATCGGTTTTCAGGGAATATTCCTCCAGAGATGGGAAACTGTTCTATGCTCAAGTACCTTAGCTTGAGCAGTAACTTTCTTGTGGGCCCAATACCTGAAGAGCTCTGTAATGCAGTGTCGTTAACGGAGATTGATCTTTACGAAAATTTCCTTTCCGGTTCGATTCATAGAACGTTTTTGAAATGTAGAAACCTTACACAGTTGGTGTTAGTCAATAATCAGATTACTGGTCCGATTCCAGCTTACCTTTCCGAGCTTCCTCTAATGCTGGTTGACCTTGACTGGAATAATTTTACTGGTACAATACCTAGAAGTCTATGGAGCTCAGAAAGTTTAATGGAATTTTCTGCTGCTAATAATCTATTAAAGGGTTCTCTCCCAATAGAGATTGGCAATGCAGTTTCGTTGCAAAGGCTTGTTCTTAGCAACAATCAATTGAGTGGCACTATACCAAAGGAAATGGGGAATCTCCAAGCTCTCTCTGTTCTGAATCTGAATTCAAATTTCCTCAAAGGGAATATACCGCCCTCGCTCGGTTCCTGCACTGGACTCACTACATTGGACCTTGGAAACAACAGTCTGAACGGGTCAATCCCCGAATCACTCTCTAAACTGGCTCAGTTACAATGCCTTGTTCTTTCTCACAATAACCTTTCAGGACCAATCCCTACTAAGCCTTCAGGGTATTTTCAGCAGTCGAAAATGCCAGATTCAGTCTTTTTTCAGCACCATGGACTATTTGACCTGTCTTATAACAGATTGACAGGTCAAATTCCGGACAAATTGGGGAATTGTGTGGTTGTTGTTGAGCTTTTGTTGAGCAACAACCTCCTTTCAGGTCAAATTCCAAGTTCACTTTCTCGCCTTACAAATCTAACGTCCTTGGATCTATCTGGGAATCTGCTCGCTGGTTCCATTCCTCCTGAATTTGGTGATTCCCTTAAGCTTCAAGGCTTGTATCTTGCGAATAATCAGCTGAACGGAAAGATTCCAGGAAGGTTAGGCCTTTTAAGCAGCTTAGTAAAGCTGAACTTAACTGGAAACAAGTTGTCCGGTTCTGTTCCAGCAAGTCTCGGTTTTCTCAAGGCACTAACTGATTTAGATTTGAGTTCAAATGAGTTAGAGGGTGAGCTCCCTTCTTCTATTTCCAGCATGCTGAACCTAGTAAGGCTTTATGTTCAGAAAAATAAGCTTTCCGGTCGGGTTGATGAGCTGTTTTCGAATTCAATAGGGTGGAGGATTGAAGCTATGAACTTGAGTAATAATTTCTTTGAAGGGATACTTTTAGGCTCCTTGGGAAACCTTTCCTACTTGACTACGTTAGATCTTCATGGAAATATGTTTTCTGGACAGATTCCATCAGATATTGGAAATCTAATGCAGCTTGAGTTTTTTGATATCTCAGAAAACCAGTTTTCTGGACAGATTCCAGATGAAATATGCAATCTTCATAACTTGCTTTACCTGAATCTTGCACAAAACAGATTCTACGGGCCTATACCGAGAAATGGGTATTGCCAGAATTTATCAAGAAACTCACTTTCCGGGAATAAAAACCTATGTGGGAGAATCATTGGGTTTAATTGCCGAATCAGAAGCATCCAGAGATCCACATTGTTGAATTCTAAGGGACTTTCTGGAATCGTCATTGGATGTGTACTAATCATTCTTTCAGCAGCACTTGTGCTAAGGAGATTGTTTACTAGAAGGCAGAGAGAGCTTGAGAATATCGATCAAAGCAAACTGAACAGCTTTATAGACCCGAACCTATACTTCTTAAGCAGCAATATCAGATCAAAAGAGCCCTTGAGCATTAACATTGCAATGTTTGAGCGGCCTCTTCTGAAACTCACCTTAGTAGACATCCTGGAAGCAACCAAGAATTTCTGCAAGACAAACATAATTGGAGACGGAGGTTTTGGAACAGTTTACAAAGCCATTCTGCCCGATGGAAAAACTGTTGCTGTTAAGAAACTAAGTGACGCAAAAACACAAGGCAATAGGGAGTTCATGGCGGAAATGGAAACTCTGGGCAAAGTGAAGCACCAAAACCTTGTTCCATTGCTCGGATACTGCTCCCTTGGAGAAGAGAAGCTCTTGGTCTATGAATACATGGTCAATGGAAGTTTAGACCTTTGGCTAAGAAACCGAACGGGAACCCTTGAAATCCTTGATTGGAACAAGCGGTTTAAAATTGCTTGTGGTGCAGCCCGTGGGTTAGCATTTCTTCACCATGGGTTCACTCCCCATATAATTCACAGAGACATAAAAGCAAGCAACATTCTTTTGAATGAAGGTTTTGAACCGAAAGTAGCAGATTTCGGGTTGGCAAGATTGATCAGTGCTTGTGAGAGTCATGTTTCTACTGATATTGCCGGAACATTTGGTTATATTCCACCCGAATATGGTCAAAGTGGGAGGTGCAGTGCAAAAGGAGACGTTTATAGTTTTGGTGTTATTCTGTTGGAGCTGATAACAGGGAAAGAGCCGACAGGGCCAGACTTCAAGGAGATTGAAGGCGGGAATTTAGTCGGATGGGTGTTTCAGAAGATGAAGAAAGGCCATACTGCGGATGTTCTTGATCCGACGGTTCTGAATGCAGATTCAAAGAATAAGATGATTCAAATGCTAAACATTGCTTGTGTTTGCTTGTCTGATAATCCTGCTAATAGACCTACTATGCTTCAGGTATTGAAGTTCTTGAAGGGGATCAAAGAAATGTAG 3909 42.39 MSRYLNFKLLFLVFSVFGLYFLSSINGVSVRKQENPERENLLSFKAVLENPHLLSSWNPSLPHCTWLGVSCRLGRVIQLVLPSLKLKGPLSPSIFNLSNLTVLDLSSNLLYGKFPPEISSLQLLNELSLTGNRFSGKFPSEFTELIQLETLKLGFNSFTGNIPRELGSLKQLRTLDLSGNGFSGGLPDHIGNLTQLRFLDLGSNLLAGSLPLTLFSNLRSLTSLDISNNTFSGSIPPEIGNLKNLTNLYISTNHFSGPLPREIGNLSLLENFFAPSCFITGPLPNELSNLKSLSELDLSYNPLKCSIPKSIGKLQKLTILNLCYAELNGSIPLELGKCRNLKALTLSFNSLSGLLPEELSELPMLTFSAEKNQLSGPLPPWLGKWNQIDSLLLSGNRFSGNIPPEMGNCSMLKYLSLSSNFLVGPIPEELCNAVSLTEIDLYENFLSGSIHRTFLKCRNLTQLVLVNNQITGPIPAYLSELPLMLVDLDWNNFTGTIPRSLWSSESLMEFSAANNLLKGSLPIEIGNAVSLQRLVLSNNQLSGTIPKEMGNLQALSVLNLNSNFLKGNIPPSLGSCTGLTTLDLGNNSLNGSIPESLSKLAQLQCLVLSHNNLSGPIPTKPSGYFQQSKMPDSVFFQHHGLFDLSYNRLTGQIPDKLGNCVVVVELLLSNNLLSGQIPSSLSRLTNLTSLDLSGNLLAGSIPPEFGDSLKLQGLYLANNQLNGKIPGRLGLLSSLVKLNLTGNKLSGSVPASLGFLKALTDLDLSSNELEGELPSSISSMLNLVRLYVQKNKLSGRVDELFSNSIGWRIEAMNLSNNFFEGILLGSLGNLSYLTTLDLHGNMFSGQIPSDIGNLMQLEFFDISENQFSGQIPDEICNLHNLLYLNLAQNRFYGPIPRNGYCQNLSRNSLSGNKNLCGRIIGFNCRIRSIQRSTLLNSKGLSGIVIGCVLIILSAALVLRRLFTRRQRELENIDQSKLNSFIDPNLYFLSSNIRSKEPLSINIAMFERPLLKLTLVDILEATKNFCKTNIIGDGGFGTVYKAILPDGKTVAVKKLSDAKTQGNREFMAEMETLGKVKHQNLVPLLGYCSLGEEKLLVYEYMVNGSLDLWLRNRTGTLEILDWNKRFKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEGFEPKVADFGLARLISACESHVSTDIAGTFGYIPPEYGQSGRCSAKGDVYSFGVILLELITGKEPTGPDFKEIEGGNLVGWVFQKMKKGHTADVLDPTVLNADSKNKMIQMLNIACVCLSDNPANRPTMLQVLKFLKGIKEM 1302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55682615 55686523 + Conep01aG0119600.1 Cone1ag1147 431838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1147 1302 SUPERFAMILY Protein kinase-like (PK-like) 1005 1296 IPR011009 -
Cone1ag1147 1302 Pfam Leucine rich repeat 555 613 IPR001611 GO:0005515(InterPro)
Cone1ag1147 1302 Pfam Leucine rich repeat 124 181 IPR001611 GO:0005515(InterPro)
Cone1ag1147 1302 Gene3D Ribonuclease Inhibitor 808 926 IPR032675 -
Cone1ag1147 1302 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Cone1ag1147 1302 Gene3D Phosphorylase Kinase; domain 1 987 1099 - -
Cone1ag1147 1302 FunFam Uncharacterized protein 366 630 - -
Cone1ag1147 1302 SMART serkin_6 1024 1296 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1147 1302 SUPERFAMILY L domain-like 637 917 - -
Cone1ag1147 1302 Gene3D Transferase(Phosphotransferase) domain 1 1100 1302 - -
Cone1ag1147 1302 SMART LRR_sd22_2 576 599 - -
Cone1ag1147 1302 SMART LRR_sd22_2 756 779 - -
Cone1ag1147 1302 SMART LRR_sd22_2 193 220 - -
Cone1ag1147 1302 SMART LRR_sd22_2 97 123 - -
Cone1ag1147 1302 SMART LRR_sd22_2 290 311 - -
Cone1ag1147 1302 SMART LRR_sd22_2 684 716 - -
Cone1ag1147 1302 SMART LRR_sd22_2 242 268 - -
Cone1ag1147 1302 Gene3D Ribonuclease Inhibitor 642 710 IPR032675 -
Cone1ag1147 1302 Gene3D Ribonuclease Inhibitor 146 212 IPR032675 -
Cone1ag1147 1302 Gene3D Ribonuclease Inhibitor 36 145 IPR032675 -
Cone1ag1147 1302 ProSitePatterns Protein kinases ATP-binding region signature. 1030 1053 IPR017441 GO:0005524(InterPro)
Cone1ag1147 1302 Gene3D Ribonuclease Inhibitor 213 366 IPR032675 -
Cone1ag1147 1302 Gene3D Ribonuclease Inhibitor 367 641 IPR032675 -
Cone1ag1147 1302 Gene3D Ribonuclease Inhibitor 711 803 IPR032675 -
Cone1ag1147 1302 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 632 928 - -
Cone1ag1147 1302 SUPERFAMILY L domain-like 50 366 - -
Cone1ag1147 1302 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1146 1158 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag1147 1302 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 665 1300 IPR051564 GO:0016020(PANTHER)
Cone1ag1147 1302 Pfam Protein tyrosine and serine/threonine kinase 1028 1295 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag1147 1302 FunFam leucine-rich repeat receptor protein kinase EMS1 216 365 - -
Cone1ag1147 1302 Pfam Leucine Rich Repeat 665 684 IPR001611 GO:0005515(InterPro)
Cone1ag1147 1302 Pfam Leucine Rich Repeat 412 432 IPR001611 GO:0005515(InterPro)
Cone1ag1147 1302 Pfam Leucine Rich Repeat 530 552 IPR001611 GO:0005515(InterPro)
Cone1ag1147 1302 Pfam Leucine Rich Repeat 390 409 IPR001611 GO:0005515(InterPro)
Cone1ag1147 1302 Pfam Leucine Rich Repeat 734 756 IPR001611 GO:0005515(InterPro)
Cone1ag1147 1302 Pfam Leucine Rich Repeat 833 854 IPR001611 GO:0005515(InterPro)
Cone1ag1147 1302 Pfam Leucine Rich Repeat 340 362 IPR001611 GO:0005515(InterPro)
Cone1ag1147 1302 Pfam Leucine Rich Repeat 642 660 IPR001611 GO:0005515(InterPro)
Cone1ag1147 1302 Pfam Leucine Rich Repeat 759 780 IPR001611 GO:0005515(InterPro)
Cone1ag1147 1302 Pfam Leucine Rich Repeat 220 242 IPR001611 GO:0005515(InterPro)
Cone1ag1147 1302 Pfam Leucine Rich Repeat 686 706 IPR001611 GO:0005515(InterPro)
Cone1ag1147 1302 Pfam Leucine Rich Repeat 856 878 IPR001611 GO:0005515(InterPro)
Cone1ag1147 1302 Pfam Leucine Rich Repeat 292 314 IPR001611 GO:0005515(InterPro)
Cone1ag1147 1302 Pfam Leucine Rich Repeat 99 121 IPR001611 GO:0005515(InterPro)
Cone1ag1147 1302 Pfam Leucine Rich Repeat 244 266 IPR001611 GO:0005515(InterPro)
Cone1ag1147 1302 ProSiteProfiles Protein kinase domain profile. 1024 1302 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1147 1302 SMART LRR_typ_2 218 242 IPR003591 -
Cone1ag1147 1302 SMART LRR_typ_2 600 637 IPR003591 -
Cone1ag1147 1302 SMART LRR_typ_2 756 780 IPR003591 -
Cone1ag1147 1302 SMART LRR_typ_2 732 755 IPR003591 -
Cone1ag1147 1302 SMART LRR_typ_2 145 169 IPR003591 -
Cone1ag1147 1302 SMART LRR_typ_2 290 314 IPR003591 -
Cone1ag1147 1302 SMART LRR_typ_2 878 911 IPR003591 -
Cone1ag1147 1302 SMART LRR_typ_2 684 708 IPR003591 -
Cone1ag1147 1302 SMART LRR_typ_2 338 361 IPR003591 -
Cone1ag1147 1302 SMART LRR_typ_2 193 217 IPR003591 -
Cone1ag1147 1302 SMART LRR_typ_2 97 121 IPR003591 -
Cone1ag1147 1302 SMART LRR_typ_2 552 576 IPR003591 -
Cone1ag1147 1302 SMART LRR_typ_2 830 854 IPR003591 -
Cone1ag1147 1302 FunFam Leucine-rich repeat receptor-like protein kinase 34 188 - -
Cone1ag1147 1302 SUPERFAMILY L domain-like 372 619 - -
Cone1ag1147 1302 FunFam serine/threonine-protein kinase BRI1-like 2 1100 1302 - -
Cone1ag1147 1302 FunFam serine/threonine-protein kinase BRI1-like 2 987 1099 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1147 Cone-Chr1:55682615 Cone6ag1315 Cone-Chr6:10561015 2.09E-100 dispersed
Cone9ag0958 Cone-Chr9:4777340 Cone1ag1147 Cone-Chr1:55682615 4.72E-54 dispersed
Cone1ag1147 Cone-Chr1:55682615 Cone5ag0856 Cone-Chr5:3659828 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82498 PF13365 Trypsin_2 3.70E-15 CL0124 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1147 - - - 0.0