Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1153 ATGGGGAAACAGAAGCAGCAAGTAATCTCTCGCTTCTTCGCACCAAAACCCAACAACAGCTCCTCATCATCTTCATCTTCTTCTTCAATACCAGCCCTTTCATCTTCTCCTTCACCATCTGGAGCTCACCCACCAACCCCACCTTCCAAAATCACCGCCACAGTCACTTTCTCTCCTTCCAAACGCCTCCTCTCTTCCCAACTCACCTCCACACAATCCAAACGCCCTAAACTCTCTCCTCACACTCACAACCCTGTAACCTCAAACCCTACTCTCCACCAGAAATTCCTCCAGAAGTTTCTAGAACCACCCTTTTCCGACCTCTCACAACCGCCACCACAAGCCAACAATATAAAATACACCCCTTTAGAACAACAGGTCGTGGACTTGAAGAAGAAACACCCAGATGTACTTCTAATGGTAGAAGTCGGTTACAGGTATAGATTTTTTGGCGAAGATGCAGAAATTGCAGCGAGGGTTTTAGGGATTTATTGTCATATGGATCATAATTTTATGACTGCAAGTGTACCCACTTTTAGATTGAATTTCCATGTTAGGAGGTTAGTGAACGCAGGGTATAAAGTAGGCGTGGTGAAACAGACGGAAACAGCGGCGATTAAGGCCCACGGGTCAAACAAATTGGGCCCATTTTGTCGGGGCCTGTCGGCCCTGTATACTAAGGCAACATTGGAGGCAGCAGAGGATATTGGGGGAAGGGAAGAGGAGTGTGGGAAGGAGAGTAATTATTTGCTTTGTGTAGTGGAGAATAGTGTTTTGGTTGAGAGTTTGGATTGTGGAATTGAAAAGGGATTTGACGTGAAAATTGGGATGGTTGCTGTGGAGATTTCGACCGGGGATATTCTTTACGGAGAATTTAATGATAATTTTATGAGGAGTGGGCTTGAGGCTGTTGTTTTGAGCTTGTCACCTTCCGAGTTGATTCTTGGTGAGCCATTGTCAAAGCTCACAGAGAAGCTGTTACTCTCATATGCTGGACCCGCCTCAAATGTACGTGTAGAGCGTGCCTCTCAAGATTGCTTCAGTAATGGTGGCGCACTTGCTGAAGTGATGTCCTTGTATGAAAACCTTGACAGAGACTATTTAGCAGATAATCAAAAGAAAACTGCAGAGTTGACCAAACCAGAAAGTGGTCACTTGGCAGTTGAGGTAATAATGAACATGCCGGATTCGGCAGTCAGAGCATTGGCCTTAACAATCCGGCATCTAAAACAATTTGGTTTCGAGAGCATTTTGTGCCTTGGAGCTTCATTTAGGCCCTTCTCCACCAAACTGGAGTTGGCCCTCTCAGCAAATGCTCTTCAACAGCTTGAGGTTTTGAAGAACAATGCTGATGGATCCGAGTCAGGCTCCTTGCTACAGTCTATGAATCAGACTCTTACTATATCAGGTTCAAGGCTTCTTAGGCACTGGGTGACACATCCTTTATGTGATAGACAGATGATATATGCTCGGCTTGATGCTGTTTCTGAAATTGCAGAACACATGACATCATCTAAAGTGTCTCAAAATTATGGGGACATAGACATAGAACAATGTGATGTAACAGATGTAAAGCCGGAGCTTAATTATTTACTTTCCAATGTCTTGACAAATTTGGGAAGGGCCCCTGATATTCAACGAGGAATAACAAGAATATATCATAAAACTGCAACTCCTTCTGAGTTCATTGCAGTTACTCAAGCTATATTGTATGCTGGAAAGCAACTTCAACAGCTTCAAATTCAAGTAGAAGACAATGAGAAATTGAGACCAAATACTGTCCGCTCCGTTCTACTAAAAAAATTAATCGAAACAGCTTCTTCTTCTAGTCTAATAGGAAATGCTGCAAAACTTTTGTCTACATTAAACAAAGAGGCTGCAGATCAAGGAGATCAAATAAACTTGATCATTTATAGCGACCAATTTCCCGAGGTTGCAAGAACCCGGAAAGAGGTTCTATTTGCAAAGCAGAAGCTGGATTCTCTTATCAGCTTGTATCGCAAGCAGCTTGGGATGCGAACATTGGAATTCATGAGCGTGTCTGGAACTACCCATTTGATTGAGTTGGTCTCAGATGTAAAGGTACCTTCGAATTGGGTTAAGGCCAGTAGTACCAAAAAGACAATAAGGTATCACCCACCTGAAGTATTGACTGCTTTAGACCAGTTATCCCTAGCAAATGAGGAGCTTATAGTAGCTTGTCGAGCTGCATGGAATAACTTCTTAATTGGATTTAACAAACACTATACTGAATTTCAAGCTGCTGTACAAGCACTGGCTACTTTAGACTGTCTTCATTCACTGGCAATTCTTTCAAGAAGTAAGAATTATGTTCGTCCAGAGTTTGTTTATGATGATGAACCTGCTCAGATACATGTATGCTCAGGGCGCCATCCGATCTTGGAGACTTTACTACAAGACAGTTTTGTCCCCAACGACACAAATTTACAGAGTGACAAAGAGCGTTGTCAAATTATTACAGGACCCAACATGGGTGGAAAGAGTTGCTATATTCGGCAAGTTGCCCTCATAGCTATAATGGCTCAGGTCGGTTCCTTTGTACCAGCATCTTCAGCAAAACTACATGTTCTGGATGGAATCTACACTAGAATGGGTGCTTCAGACAGTATTCAACGAGGAAGAAGCACCTTCCTTGAAGAACTCAGCGAGACTTCTCATATACTCCACAACTGCACAGAAAATTCCCTTGTAATCATTGACGAGCTTGGAAGAGGTACAAGTACACATGATGGAGTTGCTATTGCTTATGCAACTCTACATTATCTGCTCCAGAAGAAATGCATAGTCCTCTTCGTCACCCACTACCTGAAAATCACTGACATCATACATGAATTCCCCGGATCTGTGGGCCCATACCATGTTTCATATCTCACCTCGCGTGTGTGTAATAATTCGAGCTTGTTGGAATCAGAATCTAATGACGATGATGTCACTTTCCTTTACAAGCTTGTACCGGGTGTCGCTGAGAGGAGCTTTGGATTTAAGGTTGCTCAACTTGCACAGTTACCTTTATCATGTATTGCTCGGGCGACAAAAATAGGGGCTTGGTTGGAAGCTTTGGTAAATAGAAGAGCAGAAAATAAACCCGGAAAAGAGCAGTTGCAGGAAGCACTTTGTACGGGCCTAAATCAAGAAGGGACTATGGATTATGATTCAGTAGAAATACGTGATGCTTATGAGGATTTCTTTTCGGCCTTGAAAGCTGCTTTGTTTGATGATGACCATGCCGAAAGCTTCAGCTCTCTTAACCACGCCAGAAGCATTGCAAAGGACTTGATAACAATGTAA 3309 42.94 MGKQKQQVISRFFAPKPNNSSSSSSSSSSIPALSSSPSPSGAHPPTPPSKITATVTFSPSKRLLSSQLTSTQSKRPKLSPHTHNPVTSNPTLHQKFLQKFLEPPFSDLSQPPPQANNIKYTPLEQQVVDLKKKHPDVLLMVEVGYRYRFFGEDAEIAARVLGIYCHMDHNFMTASVPTFRLNFHVRRLVNAGYKVGVVKQTETAAIKAHGSNKLGPFCRGLSALYTKATLEAAEDIGGREEECGKESNYLLCVVENSVLVESLDCGIEKGFDVKIGMVAVEISTGDILYGEFNDNFMRSGLEAVVLSLSPSELILGEPLSKLTEKLLLSYAGPASNVRVERASQDCFSNGGALAEVMSLYENLDRDYLADNQKKTAELTKPESGHLAVEVIMNMPDSAVRALALTIRHLKQFGFESILCLGASFRPFSTKLELALSANALQQLEVLKNNADGSESGSLLQSMNQTLTISGSRLLRHWVTHPLCDRQMIYARLDAVSEIAEHMTSSKVSQNYGDIDIEQCDVTDVKPELNYLLSNVLTNLGRAPDIQRGITRIYHKTATPSEFIAVTQAILYAGKQLQQLQIQVEDNEKLRPNTVRSVLLKKLIETASSSSLIGNAAKLLSTLNKEAADQGDQINLIIYSDQFPEVARTRKEVLFAKQKLDSLISLYRKQLGMRTLEFMSVSGTTHLIELVSDVKVPSNWVKASSTKKTIRYHPPEVLTALDQLSLANEELIVACRAAWNNFLIGFNKHYTEFQAAVQALATLDCLHSLAILSRSKNYVRPEFVYDDEPAQIHVCSGRHPILETLLQDSFVPNDTNLQSDKERCQIITGPNMGGKSCYIRQVALIAIMAQVGSFVPASSAKLHVLDGIYTRMGASDSIQRGRSTFLEELSETSHILHNCTENSLVIIDELGRGTSTHDGVAIAYATLHYLLQKKCIVLFVTHYLKITDIIHEFPGSVGPYHVSYLTSRVCNNSSLLESESNDDDVTFLYKLVPGVAERSFGFKVAQLAQLPLSCIARATKIGAWLEALVNRRAENKPGKEQLQEALCTGLNQEGTMDYDSVEIRDAYEDFFSALKAALFDDDHAESFSSLNHARSIAKDLITM 1102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55701682 55706273 - Conep01aG0120200.1 Cone1ag1153 431844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1153 1102 Gene3D - 435 769 - -
Cone1ag1153 1102 SMART mutATP5 821 1022 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone1ag1153 1102 SUPERFAMILY DNA repair protein MutS, domain III 437 775 IPR036187 -
Cone1ag1153 1102 Gene3D MutS, connector domain 243 432 IPR036678 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone1ag1153 1102 PIRSF Msh6 108 1075 IPR017261 GO:0006298(InterPro)|GO:0030983(InterPro)
Cone1ag1153 1102 PIRSF Msh6 2 110 IPR017261 GO:0006298(InterPro)|GO:0030983(InterPro)
Cone1ag1153 1102 ProSitePatterns DNA mismatch repair proteins mutS family signature. 902 918 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone1ag1153 1102 FunFam DNA mismatch repair protein MSH3 777 1053 - -
Cone1ag1153 1102 Pfam MutS domain III 438 769 IPR007696 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone1ag1153 1102 SMART DNAend 453 804 IPR007696 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone1ag1153 1102 Gene3D - 777 1060 IPR027417 -
Cone1ag1153 1102 Gene3D DNA repair protein MutS, domain I 112 240 IPR016151 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone1ag1153 1102 MobiDBLite consensus disorder prediction 47 90 - -
Cone1ag1153 1102 FunFam DNA mismatch repair protein Msh3 620 745 - -
Cone1ag1153 1102 SUPERFAMILY DNA repair protein MutS, domain I 113 229 IPR016151 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone1ag1153 1102 MobiDBLite consensus disorder prediction 1 90 - -
Cone1ag1153 1102 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 777 1025 IPR027417 -
Cone1ag1153 1102 SUPERFAMILY DNA repair protein MutS, domain II 245 358 IPR036678 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone1ag1153 1102 Pfam MutS domain II 270 367 IPR007860 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone1ag1153 1102 Gene3D - 620 745 - -
Cone1ag1153 1102 FunFam DNA mismatch repair protein 244 430 - -
Cone1ag1153 1102 MobiDBLite consensus disorder prediction 1 37 - -
Cone1ag1153 1102 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 123 1051 IPR045076 GO:0003690(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006298(PANTHER)|GO:0006298(InterPro)|GO:0006312(PANTHER)|GO:0030983(InterPro)|GO:0140664(InterPro)
Cone1ag1153 1102 FunFam DNA mismatch repair protein 110 241 - -
Cone1ag1153 1102 Pfam MutS domain V 824 1022 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone1ag1153 1102 Pfam MutS domain I 121 231 IPR007695 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1153 K08736 - - mdm:103439741 1480.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0689 Cone-Chr11:4682090 Cone1ag1153 Cone-Chr1:55701682 7.56E-77 dispersed
Cone18ag0740 Cone-Chr18:4049063 Cone1ag1153 Cone-Chr1:55701682 1.62E-78 dispersed
Cone19ag0263 Cone-Chr19:1774553 Cone1ag1153 Cone-Chr1:55701682 3.82E-55 transposed
Cone1ag1153 Cone-Chr1:55701682 Cone5ag0862 Cone-Chr5:3679562 2.95E-183 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g655 . . . . . . . . Cmo16g00135 . . . . . Sed08g0333 . . Bhi01g01330 Tan01g0263 Cmetu06g0071 . Hepe07g0166 Mch10g0163 . Cla01g00411 Cam01g0429 Cec01g0420 Cco01g0442 Clacu01g0430 Cmu01g0412 Cre09g2100 Cone1ag1153 Cone5ag0862 . . Lsi05g01236 . . Cme06g00988 . Blo09g00106 . . . . . . . . . Cma16g00130 . Car16g00115 . . . . . . . . . . Cla05g00871 Cam05g0960 Cec05g0964 Cco05g0964 Clacu05g0946 Cmu05g0903 Cre05g0987 . Csa03g01702 Chy06g00938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007018 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 2 1 36