Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1157 ATGGTGAGCAAGAGGCAAAGAGAAGCTCGGAAGAAATTCCGGGAGGAACACCCTGAACTTGTTCCGAAACCAGAACCAACGCCACTAGACCTAGATCCCAAGATGATGAAGAAGCGGATGAAGAAGAAAAAGGACAAGGAGCGGAAGAAATTCAAGCTGGAAAGGAAAAAATCCGACGCGTTCAAAGCTCAAAATCAACCCAGAAATAACAAATTTACGAAGAAGCCCCTTAGAGTTCCTGGAATGAAGCCAGGTGATAGCTGTTTCATCTGCCATGCTAAAGATCATATCTCCAAGCTTTGCCCGGAGAGAGCTGGCTGGGAAAGGGACAAGATATGCTTACTTTGTAGAAGGCGTGGGCATAGTCTAAAGAACTGCCCTAACCCGGGTGCTAAAATGGATAAGAAGATATGCTATAATTGTGGAGAAACAGGGCATCCTCTTTCCAATTGTCCCTACCCTCTTACAGATGGAGGAAGTAAGTTTGCGGAATGCTTTATTTGTCATGAAATTGGACATTTAAGCAAAAACTGCCCACAAAATACTCATGGAATCTACCCTAAGGGTGGTAGCTGTAAAATTTGTGATGGTGTGACCCATCTGGCTAAAGATTGTCCTAACAAGGGCAATAGAGTTTCTTCTGCTACTGGGACATCTGCAAGGACATTTGAAGATAGGCCAAGAGCTCGGCTGACCAAATTTTATAGTGGGGACGATCTTGAAGATGATTTCACAATGGGGGAAACGGACAAGGGGGCGAAAGACAAGTCTTCTGCTCCAAAATTGTATGTACCATTTGGTCATCAGTTTAAGCCTTTAAATTCAGTTTTACAGGCGAACGCGGTGTCTGGAATGGCTGTGAGTGATGAATGCAAACTGAAATTCGTGGAGCTAAAAGCAAAGAGGAACTATCGATTCATTGTGTTCAAGATTGAGAGCCAGGAAGTTGTGGTGGAGACAGTTGGAAGCCCTGAAGAATCTTATGAGGATTTCACTGCGTCTCTGCCAGCCGATGAGTGCCGATATGCTGTCTTTGATCTTGATTTCACCACTGCTGAGAATTGCCAGAAAAGCAAGATCTTCTTCATTGCATGGTCACCGGATACATCGAAAGTGAGAATGAAGATGGTGTATGCGAGCTCAAAGGACAGATTCAAAAGGGAACTTGATGGCATCCAAGTTGAGTTGCAAGCAACGGATCCCAGTGAAATGAGCTTTGATATTATCAAAGCACGAGCATTTTAA 1245 44.02 MVSKRQREARKKFREEHPELVPKPEPTPLDLDPKMMKKRMKKKKDKERKKFKLERKKSDAFKAQNQPRNNKFTKKPLRVPGMKPGDSCFICHAKDHISKLCPERAGWERDKICLLCRRRGHSLKNCPNPGAKMDKKICYNCGETGHPLSNCPYPLTDGGSKFAECFICHEIGHLSKNCPQNTHGIYPKGGSCKICDGVTHLAKDCPNKGNRVSSATGTSARTFEDRPRARLTKFYSGDDLEDDFTMGETDKGAKDKSSAPKLYVPFGHQFKPLNSVLQANAVSGMAVSDECKLKFVELKAKRNYRFIVFKIESQEVVVETVGSPEESYEDFTASLPADECRYAVFDLDFTTAENCQKSKIFFIAWSPDTSKVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55715755 55719239 - Conep01aG0120600.1 Cone1ag1157 431848

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1157 414 Gene3D Severin 274 413 IPR029006 -
Cone1ag1157 414 SMART c2hcfinal6 164 180 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone1ag1157 414 SMART c2hcfinal6 87 103 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone1ag1157 414 SMART c2hcfinal6 112 128 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone1ag1157 414 SMART c2hcfinal6 137 153 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone1ag1157 414 SMART c2hcfinal6 191 207 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone1ag1157 414 CDD ADF_cofilin_like 283 413 IPR017904 GO:0015629(InterPro)|GO:0030042(InterPro)
Cone1ag1157 414 SUPERFAMILY Actin depolymerizing proteins 280 412 - -
Cone1ag1157 414 Pfam Cofilin/tropomyosin-type actin-binding protein 291 411 IPR002108 GO:0003779(InterPro)
Cone1ag1157 414 ProSiteProfiles ADF-H domain profile. 284 414 IPR002108 GO:0003779(InterPro)
Cone1ag1157 414 Pfam Zinc knuckle 165 180 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone1ag1157 414 Pfam Zinc knuckle 137 152 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone1ag1157 414 ProSiteProfiles Zinc finger CCHC-type profile. 165 180 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone1ag1157 414 FunFam Actin-depolymerizing factor 2 278 414 - -
Cone1ag1157 414 Gene3D - 133 157 - -
Cone1ag1157 414 MobiDBLite consensus disorder prediction 37 51 - -
Cone1ag1157 414 SUPERFAMILY Retrovirus zinc finger-like domains 81 130 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone1ag1157 414 Gene3D - 81 132 - -
Cone1ag1157 414 Gene3D - 158 222 - -
Cone1ag1157 414 MobiDBLite consensus disorder prediction 1 77 - -
Cone1ag1157 414 MobiDBLite consensus disorder prediction 1 23 - -
Cone1ag1157 414 SMART adf_2 289 414 IPR002108 GO:0003779(InterPro)
Cone1ag1157 414 SUPERFAMILY Retrovirus zinc finger-like domains 132 182 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone1ag1157 414 FunFam Zinc finger CCHC-type-containing 9 162 214 - -
Cone1ag1157 414 PANTHER OS04G0555800 PROTEIN 1 258 - -
Cone1ag1157 414 ProSiteProfiles Zinc finger CCHC-type profile. 138 152 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1157 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0659 Cone-Chr1:6241678 Cone1ag1157 Cone-Chr1:55715755 2.05E-66 dispersed
Cone1ag1157 Cone-Chr1:55715755 Cone6ag0763 Cone-Chr6:3890274 4.93E-76 dispersed
Cone1ag1157 Cone-Chr1:55715755 Cone1ag1158 Cone-Chr1:55719507 2.28E-11 tandem
Cone1ag1157 Cone-Chr1:55715755 Cone18ag1089 Cone-Chr18:7988241 1.78E-73 wgd
Cone1ag1157 Cone-Chr1:55715755 Cone5ag0867 Cone-Chr5:3693345 8.89E-80 wgd
Cone1ag1157 Cone-Chr1:55715755 Cone9ag0769 Cone-Chr9:3685427 2.27E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g677 . . Bda05g00075 . Bpe03g00286 . . . . Cmo18g01271 . . . . Sed01g3584 . Cpe14g00107 Bhi01g01319 Tan01g0250 Cmetu06g0041 . Hepe07g0157 Mch10g0153 . . . . . . . . Cone1ag1157 Cone5ag0868 . . Lsi05g01224 . . Cme06g01001 Blo07g00410 . . . . . . . . . . Cma16g00124 Cma18g01248 Car16g00113 Car18g01155 Cpe09g00089 . . . . . . . . . . . . . . . . Csa03g01713 Chy06g00948 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010880 1 1 1 0 1 1 2 1 1 0 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31