Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1166 ATGGCTTCAGATTCAAAGGAAAAAATTGATCAATCGCGCCTTGGCATGCGTTTAAAACCAGATCGGAAGGTTCGACTGGTGGCAAAAGTTAGGGGTTTTGCTGGATTGGAAGATGGGGATTCTACGAGCTCATGGATATCTGTGAACAAGCCTAGTGGTGAGGCGTCTGAGACTGTAACCATCAGTTTTGGTGACCAATCTTCAAGTCACAAAGAGTCTTATGAATTTGATTTTTGCTACGAGCAAAATCAAGATAATGATGTTATTTTCTCAAGAGAAGTGAGTCCTCTAATTTATGGTGTATTTGATGGCTGCAACGCCACTGTTATTGCATATGGAGCGAAAGGCAGTGGTAAAACTAGTCTGATTCAGGGATCATGTGAGAAGCAAGGTATAGCAACATTAGCAATGACAGAGTTTCTTCAGTTAGCTGAAGAAAAAGGGAAATTAGTTTCTTTATCTTACTATGAGGTCTGTCAAGAAAATGTTTATGATTTATTGGATTCAAAGCGGCCAGCAGTTCAGGTTCCAGTAAAATCTATGGCGGAATTTTACAAATTGTATTTGATTGGGTGTGGTCCAAGTAAAACAATCGAAAAGATACCAACTCAACCCTCTAGTAGTAGAAGCCACAAGGGTTTAATGTTGCATGTATCGTCTCCAACTAGTGGAGCTTTGAATCATGTTGGCAAGATAAATTTTGTCGATCTTTCAGGTTATGAGGATGCTAGAAGAAAAAGTGTTGATAACTCCAATTTTATTGAGAGTAATAAAATTAACAAGCCCATGTATGCTGTATTGAAGGTGGTAGCTGCTTTAAATACTAATGAAATTCATGTACCTTACCGTGAAAGCAAACTTACACGTATGTTACAAGATACCCTAGGAGGGCCAAACAAAATTTTGATGGTCGCTTGCTTGAACCCGCATTTTTGTCAAGACTCGATCTATGTGGCAAGCTTAATTGCTCGCTCTTGTCGAAGAACCAACCAGACTGTCTTAGTCTCTAATAAGAAGGCTAAAAGTATGACAAGACCATTGGTATCTTCTTCACTAAAGTACCAAATACCCAAGAGTGGTTCTACTGCTGCAAAGGCAAAAACTGGTTTCAAACTGCATCTTCGAGAGGGGAAAGCTGTGAATATGAATTCTGCAATCAAAGCAAGGAAACTATTTGATGAAGCAAATCATTTGAAGAAAACTGAAAAGGAACCTACCGAATTAGCAACTTCAGATAGAGTTGAAAGCACAGCTTCAATTAAGGATATCTATGTAGTTGATGGTCCGGGTGAACTTACTGCTAGAATCACTAAGGACATGAGAGGATTGGTTTTGCTTAAAGAGGGTGAGGAAAACAAGTGTTTACCCATAAATATCAATGACCATGATGCCAAAGGAACTCCTAGCATTGATAATGGCATGGAAGTGTCATCTTATGTGGAAGAAGAGAAGGAAAACCTGAATGCCTTGATTCCTGACGACAAATCTCCACCAATAAGTGTGAGACTACAGGAATTGTCAAACAGTTTGAAATCACTTTGTTCTTCAACTCCACTAAGCGTAAAGATCTCCAATGAGAAAGATCCTTCCTCTACAACAATACCTTCTCCAGATAAGACCTCACTTTCAGTTTCTACTCAAATTGTGGAACCTCAAACTCCAGTTACAAAACAATGCACGAGAGTTAATGATGGATTGGAGGTTTTAAATTTCAATAGCCCTTGGGAAGCCTTGAGTATTCGAAGTTCTGGTGTAAAGAATTCTCTTGTTGATGCACATCTGAGGTTCTTTAACACGGCCGGCAAGGATGAACTAAAGAGACTAAAGGGAATTGGGGAGAAGAGAGCAACCTACATAATCAAACGCCGTGAAGAATCACCAGAGCCTTTCAAAAGTCTCGATGATTTGGAAGATGTCGGACTTTCGGCAAAGCAGATTAAAGGATTGATGAAAGGAGGAGCTGCAGAGTTGTTCAATTAG 1980 39.55 MASDSKEKIDQSRLGMRLKPDRKVRLVAKVRGFAGLEDGDSTSSWISVNKPSGEASETVTISFGDQSSSHKESYEFDFCYEQNQDNDVIFSREVSPLIYGVFDGCNATVIAYGAKGSGKTSLIQGSCEKQGIATLAMTEFLQLAEEKGKLVSLSYYEVCQENVYDLLDSKRPAVQVPVKSMAEFYKLYLIGCGPSKTIEKIPTQPSSSRSHKGLMLHVSSPTSGALNHVGKINFVDLSGYEDARRKSVDNSNFIESNKINKPMYAVLKVVAALNTNEIHVPYRESKLTRMLQDTLGGPNKILMVACLNPHFCQDSIYVASLIARSCRRTNQTVLVSNKKAKSMTRPLVSSSLKYQIPKSGSTAAKAKTGFKLHLREGKAVNMNSAIKARKLFDEANHLKKTEKEPTELATSDRVESTASIKDIYVVDGPGELTARITKDMRGLVLLKEGEENKCLPININDHDAKGTPSIDNGMEVSSYVEEEKENLNALIPDDKSPPISVRLQELSNSLKSLCSSTPLSVKISNEKDPSSTTIPSPDKTSLSVSTQIVEPQTPVTKQCTRVNDGLEVLNFNSPWEALSIRSSGVKNSLVDAHLRFFNTAGKDELKRLKGIGEKRATYIIKRREESPEPFKSLDDLEDVGLSAKQIKGLMKGGAAELFN 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55753201 55757291 + Conep01aG0121500.1 Cone1ag1166 431857

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1166 659 PANTHER KINESIN-RELATED 54 480 IPR027640 GO:0003777(PANTHER)|GO:0003777(InterPro)|GO:0005871(PANTHER)|GO:0005874(PANTHER)|GO:0007018(InterPro)|GO:0007018(PANTHER)|GO:0008017(PANTHER)|GO:0008574(PANTHER)|GO:0016887(PANTHER)
Cone1ag1166 659 PRINTS Kinesin heavy chain signature 231 249 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone1ag1166 659 PRINTS Kinesin heavy chain signature 104 125 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone1ag1166 659 PRINTS Kinesin heavy chain signature 280 301 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone1ag1166 659 PRINTS Kinesin heavy chain signature 201 218 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone1ag1166 659 Gene3D Kinesin motor domain 6 318 IPR036961 -
Cone1ag1166 659 FunFam Kinesin-like protein KIN-10C 583 657 - -
Cone1ag1166 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 311 IPR027417 -
Cone1ag1166 659 SUPERFAMILY RuvA domain 2-like 594 647 IPR010994 -
Cone1ag1166 659 Gene3D - 586 656 - -
Cone1ag1166 659 ProSiteProfiles Kinesin motor domain profile. 23 328 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone1ag1166 659 SMART kinesin_4 21 337 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone1ag1166 659 MobiDBLite consensus disorder prediction 521 542 - -
Cone1ag1166 659 Pfam Helix-hairpin-helix motif 598 639 - -
Cone1ag1166 659 Pfam Kinesin motor domain 30 310 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1166 K10403 - - vvi:100250822 572.778
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1343 Cone-Chr13:9865539 Cone1ag1166 Cone-Chr1:55753201 3.55E-65 dispersed
Cone19ag1327 Cone-Chr19:8885377 Cone1ag1166 Cone-Chr1:55753201 1.86E-53 dispersed
Cone1ag1166 Cone-Chr1:55753201 Cone19ag0005 Cone-Chr19:53712 2.82E-25 dispersed
Cone1ag1166 Cone-Chr1:55753201 Cone12ag0307 Cone-Chr12:1672115 2.94E-25 wgd
Cone1ag1166 Cone-Chr1:55753201 Cone5ag0876 Cone-Chr5:3743178 0 wgd
Cone1ag1166 Cone-Chr1:55753201 Cone8ag0301 Cone-Chr8:1741996 4.86E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g714 . Blo15g00172 . . . Bpe07g00933 . . . . . Cma15g01088 . Car15g01000 . . . . . . . . . . Cla01g00444 Cam01g0467 Cec01g0456 Cco01g0478 Clacu01g0466 Cmu01g0444 Cre09g2068 Cone1ag1166 Cone5ag0876 . . . Csa05g00279 Chy09g01230 . . . Bda06g00688 . . . . Bma12g01117 . . Cmo15g01148 . . . . . Cpe13g00262 Bhi12g00497 . . . . . Lcy12g0037 . . . . . . . . . . Cme09g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009133 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34