Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1173 ATGTGGCTGTTTGGTAGAAGAAAAGGGCCATCTGGGTTTTCGTGGTCTTCAACGGCTGAAGAAGTCACTCAAGGAATCGATGGGAATGGTCTTTCCGCCATTGTTACAGGAGCATCTAGTGGTATCGGTCTTGAAACTACTCGCGTTCTTGCACTGCGTGGGGTCCACGTAGTCATGGGGGTGAGAAATGTATCTGCCGGTAAGGATGTCAGAGAAGCTATTGTCAAGGAAACTCCATCTGCTAAGGTTGATGTGATGGAGCTCGATCTCAGTTCTTTATCTGCTGTAAGAAAATTTGCTTCGGATTACAATTCATCTGGTCTTCCACTTAACATTTTAATTAATAATGCAGGAGTCATGGCTACCCCTTTCAAGCTTTCCTCGGATAATATCGAACTGCAGTTTGCTACAAATCACCTTGGTCATTTTCTTTTGACAAGTCTTTTGTTGGAAAATATGAAAAAGACAGCTTCCAAATCTAGTAAAGAAGGAAGGATTGTAAATGTCTCCTCAGAGGCTCATCGTTTCACGTATAGGGAAGGAATTCGCTTTGAGAAAATCAATGATGAATCAGGGTACAAAAGTTTTGCTGCATATGGCCAATCAAAGCTCGCTAATGTGTTGCATGCTAATGAGCTTGCAAGACGTTTCAAGGAAGATGAAGTTCATATAACCGCAAATTCTCTTCATCCAGGAGCCATTGTCACCAATCTTTTCCGTCATATGGGCATTGCCGAAGGTCTCGTAAATACGCTCGGTAGAGTCTTGCTAAAAAATGCTCAGCAGGGTGCGGCAACAACATGCTATGTAGCATTGCATCCACAAGTGAAGGGGGTGAGTGGCGAGTATTTTTCCGACAGTAACATAGCAAAGGCAAGCTCAAATGGACAAGATGTGAATTTGGCAAATAAACTCTGGGATTTCAGCACCAAATTGGTCAAATAA 945 42.75 MWLFGRRKGPSGFSWSSTAEEVTQGIDGNGLSAIVTGASSGIGLETTRVLALRGVHVVMGVRNVSAGKDVREAIVKETPSAKVDVMELDLSSLSAVRKFASDYNSSGLPLNILINNAGVMATPFKLSSDNIELQFATNHLGHFLLTSLLLENMKKTASKSSKEGRIVNVSSEAHRFTYREGIRFEKINDESGYKSFAAYGQSKLANVLHANELARRFKEDEVHITANSLHPGAIVTNLFRHMGIAEGLVNTLGRVLLKNAQQGAATTCYVALHPQVKGVSGEYFSDSNIAKASSNGQDVNLANKLWDFSTKLVK 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55779073 55782087 + Conep01aG0122200.1 Cone1ag1173 431864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1173 314 PANTHER RETINOL DEHYDROGENASE 10 314 - -
Cone1ag1173 314 CDD retinol-DH_like_SDR_c_like 33 306 - -
Cone1ag1173 314 Gene3D - 26 314 - -
Cone1ag1173 314 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 199 218 IPR002347 -
Cone1ag1173 314 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 172 IPR002347 -
Cone1ag1173 314 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 108 119 IPR002347 -
Cone1ag1173 314 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 32 289 IPR036291 -
Cone1ag1173 314 Pfam short chain dehydrogenase 33 177 IPR002347 -
Cone1ag1173 314 PRINTS Glucose/ribitol dehydrogenase family signature 32 49 IPR002347 -
Cone1ag1173 314 PRINTS Glucose/ribitol dehydrogenase family signature 158 174 IPR002347 -
Cone1ag1173 314 PRINTS Glucose/ribitol dehydrogenase family signature 222 239 IPR002347 -
Cone1ag1173 314 PRINTS Glucose/ribitol dehydrogenase family signature 108 119 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1173 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1173 Cone-Chr1:55779073 Cone2ag0923 Cone-Chr2:34998521 5.80E-85 dispersed
Cone13ag1331 Cone-Chr13:9818549 Cone1ag1173 Cone-Chr1:55779073 8.48E-110 transposed
Cone1ag1173 Cone-Chr1:55779073 Cone14ag0073 Cone-Chr14:394425 9.07E-117 wgd
Cone1ag1173 Cone-Chr1:55779073 Cone15ag0076 Cone-Chr15:418365 1.25E-162 wgd
Cone1ag1173 Cone-Chr1:55779073 Cone5ag0880 Cone-Chr5:3771236 5.88E-164 wgd
Cone1ag1173 Cone-Chr1:55779073 Cone6ag0787 Cone-Chr6:4004087 6.33E-18 wgd
Cone1ag1173 Cone-Chr1:55779073 Cone9ag0789 Cone-Chr9:3786302 1.20E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1173 Cone5ag0880 Cone14ag0073 Cone15ag0076 . . Chy09g01373 . . . . . . . . Bma12g01115 . . . . . . . . . Bhi12g00030 . . Lac11g0045 . . Lcy12g0042 . . . . . . . Lsi09g00093 . . Cme09g01920
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126