Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1174 ATGCCGTCATGGTGGGTGAAATCATCATCCAAGGAAGTGAAGAAGAAAGCGGGTAAAGAAAGCTTCATCAACACAATACACCGTAAACTTAAAAGCCCATCTGAAGGTAAAGTAAACAGCCGATCAGGTGTGGCCCAAAGACATTGCAGTGACACTTTTTCCGAGAAGAGGGATTCAAGATCACCTTCTCCTTCCAAAAAGGTTTCAAGATGTCAAAGCTTTGTCGACCGGCCCCATGCTCAACCACTTCCCCTTCCAGGTCTATGCCCGGCCAGTGTTGTCCGAACAGATTCTGGAATCAACATATCAACAAAACCCAGATCAGAAAAAGGGTTGAAGACATCTTCGTTTCTTCTTCCGAGGCCTGCATGCATTCGTGGCAGGTCAAACCCGGCAGATTTAGATGGAGATTTGGTTGGTTCGATCTCTAGTGAGGGCTCGATTGATAGCGATGATGCTGCTGATTCACGTCATCGTAGTCCTCGGGTTACTGACTATGACATTGGGCCCAGAACTGCAGCCGGAAGCCCTTCCAGTGTGATTCCTAAGGATCAATCTTCTACTATCATCCAAATAAGCTCAAGAGAGGCCAAAAAACCAGCAAACTTATCATTTGGCAATCATATATCCTCTACATCCCCTAAAAGGAGGCCTCTAAGCAGTCGTGTGACAAATCTTCAAGTTCCTCCACCTGGGGCTTTCTGTAGTGCTCCAGACAGTTCCATGTCAAGTCCTTCTAGAAGCCCTATGAGGGCATTTAGCACCGAGCAAGTTATGAACACGGCTTTCTGGGCCGGGAAGCCTTATCCAGAGGTCACTTTAACTGGGTCGGGCCAATGCTCCAGTCCTGGTTCTGGCCACAATTCGGGTCATAATTCAATGGGGGGTGATTTGTCGGGCCAGTTGTTTTGGCAGCAGCAGAGCAGGGGAAGCCCGGAATATTCTCCAGTTCCTAGTCCAAGAATGACTAGCCCAGGTCCAAGCTCGAGAATTCATAGCGGTGCAGTCACGCCTATTCATCCTAGAGCCATAGGGGGACCAAATGAGTCACAGACAAGTTGGCCCGAGGAGAAACAGAGTCACAGATTGCCTCTACCTCCTGTATCTATCTCTAATCCTTCACCATTTTCACATTCTAATTCAGCTGTGGCCTCTCCTTCTGTACCAAGAAGTCCGGGAAGGGCAGAGACTCCTCCTTTGAGCCCTGGATCACGCTGGAAAAGGGGGAAACTACTGGGTAGGGGCACTTTTGGACATGTCTATGTTGGCTTTAATAGTGAAAGCGGTGAAATGTGCGCTATGAAAGAAGTAACATTATTTTCAGATGATGCAAAGTCTAAGGAAAGTGCCAAGCAATTAATGCAGGAAATCACTTTGTTAAGCCGTTTACGACATCCAAATATTGTACAGTATTATGGGTCGGAATCGGTGGATGACAAACTATATATATACCTGGAGTATGTATCTGGTGGCTCCATATATAAACTTCTTCAAGAATATGGACTATTCGGCGAACTAGCAATCCGAAGTTATACTCAGCAAATACTATCAGGGCTTGCATATTTACATGCAAAAAATACCATCCATAGGGATATTAAAGGAGCAAATATACTCGTGGACCCTAATGGCCGTGTTAAGTTGGCAGACTTTGGAATGGCAAAGCATATTACTGGGCAATCGTGTCCATTGTCATTCAAAGGTAGCCCTTATTGGATGGCACCCGAGGTTATAAAGAACTCAAGCGGCTGCAACCTTGCTGTGGACATTTGGAGTCTAGGATGCACTGTTTTGGAGATGGCTACCACCAAGCCGCCTTGGAGCCAGTATGAAGGCGTTGCTGCGATGTTTAAAATTGGCAATGGCAAAGAACTCCCAATGATTCCAGATAACCTGTCAGAAGACGGGAAAGATTTTGTGAGGCTATGTTTGCAAAGGAATCCACTCCATCGTCCTACAGCTCTTCAACTTTTGGATCATCCCTTTGTTAAATATGCTGCTCCCCTTGAAAGGCCTATTTTGAGCACCGATCCACCTTCAGATCCAACCCCCACTGGGCTCACAAATGGAGTGAAAGCAATGGGCATTGGGCAAGTGAGGAATCATACCATGTTGGACTCGGATCGACTTGAAGTTCATTCATCTAGAGTCCCCAAAACTGCTCTCCATTCCAGTGAAATCCATATTCCAAGAAACATATCATGCCCTGTTTCACCCATAGGGAGCCCTCTATTGCATTCAAGGTCACCACAACATCCCAATGGAAGAATGTCTCCTTCTCCTATATCGAGTCCTCGAACCACTTCGGGATCATCTACACCTCTGACTGGCGCTAGTGGGGCCCTCCCATATAACCACCTAAAACAAACTGTATACTTGCAAGAGGGTTTTACAAGCTTGCCCAAGTCCCCAAAAAATGGTCTATACACCAATGGCACCAGCTCGTATCAAGATTCTACCCCCGATATGTTCCGAGGAATGCAGGCAGGTGGTGGAACCCACATCTTCTCGGAACACTTCTATGACGGGCAATCGGTCTTGGCTGATCGGGTTTCTCGGCAGCTTCTGAGGGATCATGTTAAGACAAACCCGTCTTTGGATTTGAGTGCTAGCTCTTCCCTGCCTAGTCGAGCAAGTGGTATCTAA 2643 46.77 MPSWWVKSSSKEVKKKAGKESFINTIHRKLKSPSEGKVNSRSGVAQRHCSDTFSEKRDSRSPSPSKKVSRCQSFVDRPHAQPLPLPGLCPASVVRTDSGINISTKPRSEKGLKTSSFLLPRPACIRGRSNPADLDGDLVGSISSEGSIDSDDAADSRHRSPRVTDYDIGPRTAAGSPSSVIPKDQSSTIIQISSREAKKPANLSFGNHISSTSPKRRPLSSRVTNLQVPPPGAFCSAPDSSMSSPSRSPMRAFSTEQVMNTAFWAGKPYPEVTLTGSGQCSSPGSGHNSGHNSMGGDLSGQLFWQQQSRGSPEYSPVPSPRMTSPGPSSRIHSGAVTPIHPRAIGGPNESQTSWPEEKQSHRLPLPPVSISNPSPFSHSNSAVASPSVPRSPGRAETPPLSPGSRWKRGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLRHPNIVQYYGSESVDDKLYIYLEYVSGGSIYKLLQEYGLFGELAIRSYTQQILSGLAYLHAKNTIHRDIKGANILVDPNGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSSGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNGKELPMIPDNLSEDGKDFVRLCLQRNPLHRPTALQLLDHPFVKYAAPLERPILSTDPPSDPTPTGLTNGVKAMGIGQVRNHTMLDSDRLEVHSSRVPKTALHSSEIHIPRNISCPVSPIGSPLLHSRSPQHPNGRMSPSPISSPRTTSGSSTPLTGASGALPYNHLKQTVYLQEGFTSLPKSPKNGLYTNGTSSYQDSTPDMFRGMQAGGGTHIFSEHFYDGQSVLADRVSRQLLRDHVKTNPSLDLSASSSLPSRASGI 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55782217 55788035 - Conep01aG0122300.1 Cone1ag1174 431865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1174 880 SMART serkin_6 406 662 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1174 880 FunFam Mitogen-activated protein kinase kinase kinase 404 685 - -
Cone1ag1174 880 MobiDBLite consensus disorder prediction 150 165 - -
Cone1ag1174 880 MobiDBLite consensus disorder prediction 50 64 - -
Cone1ag1174 880 ProSiteProfiles Protein kinase domain profile. 406 662 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1174 880 Gene3D Transferase(Phosphotransferase) domain 1 404 676 - -
Cone1ag1174 880 MobiDBLite consensus disorder prediction 200 249 - -
Cone1ag1174 880 MobiDBLite consensus disorder prediction 739 780 - -
Cone1ag1174 880 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 40 665 IPR050538 -
Cone1ag1174 880 MobiDBLite consensus disorder prediction 96 111 - -
Cone1ag1174 880 MobiDBLite consensus disorder prediction 743 778 - -
Cone1ag1174 880 SUPERFAMILY Protein kinase-like (PK-like) 404 734 IPR011009 -
Cone1ag1174 880 MobiDBLite consensus disorder prediction 200 227 - -
Cone1ag1174 880 MobiDBLite consensus disorder prediction 372 387 - -
Cone1ag1174 880 CDD STKc_MEKK1_plant 405 662 - -
Cone1ag1174 880 ProSitePatterns Protein kinases ATP-binding region signature. 412 435 IPR017441 GO:0005524(InterPro)
Cone1ag1174 880 MobiDBLite consensus disorder prediction 16 186 - -
Cone1ag1174 880 Pfam Protein kinase domain 407 662 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1174 880 MobiDBLite consensus disorder prediction 275 314 - -
Cone1ag1174 880 MobiDBLite consensus disorder prediction 275 407 - -
Cone1ag1174 880 MobiDBLite consensus disorder prediction 16 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0023 Cone-Chr12:182913 Cone1ag1174 Cone-Chr1:55782217 4.89E-139 dispersed
Cone1ag1174 Cone-Chr1:55782217 Cone8ag0019 Cone-Chr8:140232 2.13E-142 dispersed
Cone1ag1174 Cone-Chr1:55782217 Cone14ag0072 Cone-Chr14:390001 0 wgd
Cone1ag1174 Cone-Chr1:55782217 Cone15ag0075 Cone-Chr15:412549 0 wgd
Cone1ag1174 Cone-Chr1:55782217 Cone5ag0881 Cone-Chr5:3773994 0 wgd
Cone1ag1174 Cone-Chr1:55782217 Cone9ag1329 Cone-Chr9:9976718 9.51E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82500 PF13344 Hydrolase_6 3.20E-34 CL0137 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1174 K20717 - mdm:103442920 1229.54