Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone1ag1180 | ATGGTGATGTCTCTAAGACTCCCTTCTCTCGCTTCGATATTCTCCCCCGTCGCAACCGCCACCATCACTCTCTCTGGCCGTTCGCGCTGGATTCTCCGGCGTCGTCACCGTCAAATCCGGTCACCTGTACTTGCTGCTGGTTTTTCTGCGCAGAGCGTAGCGAACGATGCAGAGGACCGAGTTGATACCCCGAAGAACCGAGTTCAGGATGGAGTCATCACACCTCGATCGCAGGACTTCAATGCTTGGTACTCGGATATTATTGCTAATGCTGAGCTCGCGGATTACGGTCCTGTTCGTGGTACTATGGTTATCCGTCCATACGGTTACGCTATTTGGGAGGCAATTCAGGATTATTTGAATGTTAAGTTCAAGGAGACTGGTCACAGTAACATGTACTTTCCACAGTTTATTCCGTACTCCTTCATAGAGAAAGAAGCTAGTCATGTTGAGGGATTCAGTCCGGAGCTAGCTCTTGTGACGATTGGGGGAGGAAAGGAACTTGAAGAAAAACTTGTGGTTCGACCGACGAGTGAAACCATAGTGAATCACATGTTTACGCAGTGGATTTGTAGTTACAGAGATCTTCCTCTCATGATCAACCAGTGGGCAAATGTTACAAGATGGGAGAAGAGAACAAAGCCATTTGTGAGGACACTTGAATTTCTCTGGCAGGAGGGTCATACAGCTCATGCCACTCCAGAAGAGGCAGAAAAAGAGGCTATTCAGATGATTGATGTCTATACAAAATTTGCTTATGAGCAAGCTGCAATACCTGTCATTACTGGTCGGAAGTCTAAGGTGGAGACTTTTGCTGGTGCAGTTAGGACTTACACGATAGAGGGCATGATGGGTGATAGAAAGGCATTGCAGGCTGGTACTAGCCACAACCTTGGTCAGAACTTCTCTCGGGCATTTGGAACTCAGTTCACAGACGAAGTTGGACAAAGGCAGTATGTGTGGCAGACATCTTGGGCTATTAGTACTCGATTTGTTGGCGGTATTATCATGGCTCATGGCGATGACGCAGGTTTAATGCTCCCTCCTAAGATTGCTCCAATACAGGTGATAATTATACCAATTTGGAAGAAGGATGAGGATAGAGTGGGAGTTCTAACTGCTGCATCATCTGCAAAAGAAATGCTTCATTCTGCAGGGATAAAAGTTAAACTTGATGACTCAGACCAGAGAACCCCAGGATGGAAATTCAATTTCTGGGAGATGAAGGGAGTACCTTTGAGGATTGAAATTGGCCCCCGTGATGTCTCAAGTCAGAGTGTGGTCATTTCAAGGAGAGACATTCCTGGAAAGCAAGGAAAAGTTTTTGGAATATCTATGGAACCTTCTACTTTAGTGGCTTATGTGAAAGACAAGCTGGAAGAGATTCAGTCATCCCTTTTAGAAAAAGCTACATCTTTCCGAGACAGTAATATCGTTGATGTGAGCTCTTACGATGAACTCAAAGAGGCAATCTCTCAGGGAAAATGGGCCAGAGGTCCTTGGTCAGCCAATGATGAAGATGAATTAAGAGTGAAAGAAGAAACAGGGGCCACAATTAGGTGTTTTCCTTTTGAACAACCAGATGGGTCCAAGACATGCTTCATGACCGGAAATCCTGCAGAAGAGGTTGCCATATTTGCCAAGTCTTATTGA | 1653 | 45.55 | MVMSLRLPSLASIFSPVATATITLSGRSRWILRRRHRQIRSPVLAAGFSAQSVANDAEDRVDTPKNRVQDGVITPRSQDFNAWYSDIIANAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWICSYRDLPLMINQWANVTRWEKRTKPFVRTLEFLWQEGHTAHATPEEAEKEAIQMIDVYTKFAYEQAAIPVITGRKSKVETFAGAVRTYTIEGMMGDRKALQAGTSHNLGQNFSRAFGTQFTDEVGQRQYVWQTSWAISTRFVGGIIMAHGDDAGLMLPPKIAPIQVIIIPIWKKDEDRVGVLTAASSAKEMLHSAGIKVKLDDSDQRTPGWKFNFWEMKGVPLRIEIGPRDVSSQSVVISRRDIPGKQGKVFGISMEPSTLVAYVKDKLEEIQSSLLEKATSFRDSNIVDVSSYDELKEAISQGKWARGPWSANDEDELRVKEETGATIRCFPFEQPDGSKTCFMTGNPAEEVAIFAKSY | 550 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 55805774 | 55810598 | + | Conep01aG0122900.1 | Cone1ag1180 | 431871 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone1ag1180 | 550 | Hamap | Proline--tRNA ligase [proS]. | 73 | 550 | IPR004499 | GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro) | |
| Cone1ag1180 | 550 | FunFam | Proline--tRNA ligase, chloroplastic/mitochondrial | 349 | 473 | - | - | |
| Cone1ag1180 | 550 | CDD | ProRS_anticodon_zinc | 344 | 550 | - | - | |
| Cone1ag1180 | 550 | Gene3D | - | 349 | 474 | IPR036621 | - | |
| Cone1ag1180 | 550 | CDD | ProRS_core_arch_euk | 79 | 337 | IPR033721 | - | |
| Cone1ag1180 | 550 | Pfam | tRNA synthetase class II core domain (G, H, P, S and T) | 167 | 336 | IPR002314 | GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro) | |
| Cone1ag1180 | 550 | Pfam | Prolyl-tRNA synthetase, C-terminal | 484 | 550 | IPR016061 | GO:0000166(InterPro)|GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro) | |
| Cone1ag1180 | 550 | Gene3D | - | 479 | 550 | IPR017449 | GO:0000166(InterPro)|GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro) | |
| Cone1ag1180 | 550 | PANTHER | PROLYL-TRNA SYNTHETASE | 57 | 550 | IPR004499 | GO:0004827(PANTHER)|GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0006433(PANTHER)|GO:0006433(InterPro)|GO:0009570(PANTHER)|GO:0017101(PANTHER) | |
| Cone1ag1180 | 550 | SUPERFAMILY | Class II aaRS ABD-related | 344 | 476 | - | - | |
| Cone1ag1180 | 550 | PRINTS | Prolyl-tRNA synthetase signature | 172 | 183 | IPR002316 | GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro) | |
| Cone1ag1180 | 550 | PRINTS | Prolyl-tRNA synthetase signature | 202 | 210 | IPR002316 | GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro) | |
| Cone1ag1180 | 550 | PRINTS | Prolyl-tRNA synthetase signature | 131 | 149 | IPR002316 | GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro) | |
| Cone1ag1180 | 550 | PRINTS | Prolyl-tRNA synthetase signature | 211 | 222 | IPR002316 | GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro) | |
| Cone1ag1180 | 550 | Pfam | Anticodon binding domain | 355 | 438 | IPR004154 | - | |
| Cone1ag1180 | 550 | NCBIfam | proline--tRNA ligase | 74 | 550 | IPR004499 | GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro) | |
| Cone1ag1180 | 550 | SMART | ProRS_C_1_2 | 484 | 550 | IPR016061 | GO:0000166(InterPro)|GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro) | |
| Cone1ag1180 | 550 | FunFam | Proline--tRNA ligase | 68 | 348 | - | - | |
| Cone1ag1180 | 550 | FunFam | Proline--tRNA ligase, chloroplastic/mitochondrial | 479 | 550 | - | - | |
| Cone1ag1180 | 550 | SUPERFAMILY | Class II aaRS and biotin synthetases | 79 | 342 | IPR045864 | - | |
| Cone1ag1180 | 550 | Gene3D | Bira Bifunctional Protein; Domain 2 | 74 | 348 | IPR045864 | - | |
| Cone1ag1180 | 550 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 100 | 348 | IPR006195 | - | |
| Cone1ag1180 | 550 | SUPERFAMILY | C-terminal domain of ProRS | 478 | 550 | IPR017449 | GO:0000166(InterPro)|GO:0004827(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006433(InterPro) |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone1ag1180 | K01881 | - | - | mdm:139197005 | 926.391 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone1ag1180 | Cone-Chr1:55805774 | Cone5ag0884 | Cone-Chr5:3788311 | 0 | transposed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi16g742 | . | . | Bda05g00086 | . | Bpe03g00272 | . | Bma10g01239 | . | . | Cmo18g01292 | . | . | . | . | Sed11g1514 | . | . | Bhi01g01267 | Tan01g0211 | Cmetu11g1479 | . | Hepe07g0133 | . | . | . | . | . | . | . | . | . | Cone1ag1180 | Cone5ag0884 | . | . | Lsi05g01205 | . | . | . | Blo07g00389 | . | . | . | . | . | . | . | . | . | . | . | Cma18g01263 | . | Car18g01173 | Cpe09g00073 | . | . | . | . | . | . | . | . | Cla05g00903 | Cam05g0987 | Cec05g0993 | Cco05g0991 | Clacu05g0975 | Cmu05g0932 | Cre05g1017 | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0010881 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 31 |