Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1191 ATGGCAGACGTGAAGATGGGCGGCGACGCTGAAACCTTTGCCTTTCAGGCGGAGATCAACCAGCTTCTGAGCTTGATCATCAACACTTTCTACAGCAACAAGGAGATCTTTCTTCGGGAGCTTATTAGCAATGCATCTGATGCTCTGGACAAGATTCGGTTTGAGAGCTTGACTGATAAGAGCAAACTCGATGCTCAACCAGAGCTTTTTATTAGGCTTGTACCTGACAAGGTCAACAAGACTCTCTCCATCATTGATAGCGGCATCGGCATGACCAAAGCAGATTTGGTGAACAACTTGGGTACAATTGCGAGATCTGGTACTAAGGAATTCATGGAGGCCCTGCAAGCTGGGGCGGATGTGAGCATGATTGGGCAATTTGGTGTTGGGTTTTACTCTGCATATCTTGTTGCAGAGAAGGTAATTGTGACCACAAAGCACAATGACGACGAGCAGTACATTTGGGAATCTCAGGCTGGGGGTTCATTCACTGTTACAAGGGATGTAGATGGAGAACAGCTTGGCAGGGGTACCAAGATCACTCTCTTCCTCAAGGAAGATCAGTTGGACTATTTAGAGGAGCGGAGAATTAAGGACCTTGTGAAGAAGCATTCTGAATTCATCAGCTACCCAATTTACCTCTGGACTGAGAAAACAACAGAGAAAGAAATTAGCGATGATGAGGAAGATGAACCTAAGAAGGAGGAGGAAGGTGATGTTGAGGAAGTTGACGAGGACAAGGAGAAGAAATCAAAGAAGAAGAAGATCAAGGAGGTTTCTCACGAATGGCAGGTTATCAACAAACAGAAACCTATCTGGTTAAGAAAACCAGAAGAGATCACAAAGGAGGAGTACGCTTCCTTCTACAAGAGCTTGACAAACGACTGGGAAGATCATCTTGCTGTGAAACACTTCTCTGTAGAAGGTCAGCTCGAGTTCAAGGCTATTCTCTTTGTACCCAAGAGAGCTCCATTTGATCTGTTTGACACCCGAAAGAAGATGAACAACATCAAGCTTTATGTCAGAAGGGTGTTCATCATGGACAACTGTGAAGAGCTCATTCCTGAGTACCTCGGATTCGTCAAGGGAGTGGTTGATTCTGATGATTTGCCCCTCAACATCTCTCGTGAGATGCTCCAACAGAACAAGATCCTAAAGGTGATCAGGAAAAACCTCGTGAAGAAATGCATTGAAATGTTCAATGAGATTGCAGAGAACAAGGAGGATTACAACAAGTTCTATGAATCCTTCTCTAAGAACCTGAAGCTGGGTATCCATGAAGATAGCCAGAACAGATCCAAACTGGCTGATTTACTTCGTTACCACTCTACGAAGAGTGGTGATGAGCTGACGAGTTTCAAAGACTACGTAACAAGGATGAAAGAGGGACAGAAGGATATATACTATATCACCGGTGAGAGCAAAAAAGCAGTGGAGAATTCTCCTTTCTTGGAACGGCTGAAGAAGAAGGGCTATGAGGTTCTATTCATGGTTGATGCCATTGATGAGTATGCGGTTGGACAGTTGAAGGAATACGATGGTAAGAAGCTGGTTTCTGCTACGAAAGAAGGATTGAGGCTAGATGATGAGACCGAAGAAGAGAAGAAGAAAAGGGAGGAAAAGAAGGAATCATTTGAAAATCTATGCAAGGCAATAAAGGACATTTTGGGGGACAAGGTTGAGAAGGTGGTTGTTTCGGACAGAATTGTGGACTCTCCTTGCTGCTTGGTGACTGGAGAGTATGGTTGGACGGCGAACATGGAGAGGATTATGAAGGCACAGGCACTGAGAGATAGCAGCATGAGTTCTTACATGTCGAGCAAGAAAACAATGGAAATCAACCCGGACAATGGAATCATGGAGGAGTTGAGGAAGAGAGCTGAAGCGGACAAGAATGATAAGTCAGTGAAGGATCTTGTGTTGTTGCTCTTTGAGACTGCTCTCTTGACTTCTGGATTCAGCCTTGATGATCCCAACACTTTTGCGGCGAGAATTCATAGGATGTTGAAGCTCGGACTTAGCATTGATGAGGATGAGCATGGCGGTGAAGATGATGCTGATATGCCTGCTTTGGAGGAGGATGGAGCTGAGGAGAGTAAGATGGAGGAAGTGGACTGA 2118 44.85 MADVKMGGDAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFESLTDKSKLDAQPELFIRLVPDKVNKTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYIWESQAGGSFTVTRDVDGEQLGRGTKITLFLKEDQLDYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEEDEPKKEEEGDVEEVDEDKEKKSKKKKIKEVSHEWQVINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYESFSKNLKLGIHEDSQNRSKLADLLRYHSTKSGDELTSFKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLRLDDETEEEKKKREEKKESFENLCKAIKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFAARIHRMLKLGLSIDEDEHGGEDDADMPALEEDGAEESKMEEVD 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55855561 55858401 + Conep01aG0124000.1 Cone1ag1191 431882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1191 705 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 9 680 IPR001404 GO:0005524(InterPro)|GO:0005829(PANTHER)|GO:0005886(PANTHER)|GO:0006457(PANTHER)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0032991(PANTHER)|GO:0034605(PANTHER)|GO:0048471(PANTHER)|GO:0050821(PANTHER)|GO:0051082(PANTHER)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cone1ag1191 705 MobiDBLite consensus disorder prediction 677 705 - -
Cone1ag1191 705 SUPERFAMILY HSP90 C-terminal domain 547 669 IPR037196 -
Cone1ag1191 705 CDD HATPase_Hsp90-like 20 208 IPR020575 -
Cone1ag1191 705 MobiDBLite consensus disorder prediction 223 243 - -
Cone1ag1191 705 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 35 187 IPR003594 -
Cone1ag1191 705 MobiDBLite consensus disorder prediction 678 705 - -
Cone1ag1191 705 FunFam Heat shock protein 90 alpha 436 522 - -
Cone1ag1191 705 Coils Coil 233 253 - -
Cone1ag1191 705 Gene3D - 267 435 - -
Cone1ag1191 705 PIRSF HSP90_HTPG 1 705 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cone1ag1191 705 Gene3D - 9 234 IPR036890 -
Cone1ag1191 705 Gene3D - 436 523 - -
Cone1ag1191 705 ProSitePatterns Heat shock hsp90 proteins family signature. 31 40 IPR019805 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Cone1ag1191 705 MobiDBLite consensus disorder prediction 221 248 - -
Cone1ag1191 705 FunFam Heat shock protein 90 alpha 523 674 - -
Cone1ag1191 705 Gene3D - 524 674 IPR037196 -
Cone1ag1191 705 Coils Coil 528 548 - -
Cone1ag1191 705 Pfam Hsp90 protein 190 693 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cone1ag1191 705 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11 219 IPR036890 -
Cone1ag1191 705 SMART HKATPase_4 33 188 IPR003594 -
Cone1ag1191 705 SUPERFAMILY Ribosomal protein S5 domain 2-like 268 523 IPR020568 -
Cone1ag1191 705 Hamap Chaperone protein HtpG [htpG]. 8 670 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cone1ag1191 705 FunFam Heat shock cognate protein 8 234 - -
Cone1ag1191 705 FunFam Heat shock protein 90 alpha 267 435 - -
Cone1ag1191 705 PRINTS 90kDa heat shock protein signature 11 31 IPR020575 -
Cone1ag1191 705 PRINTS 90kDa heat shock protein signature 81 98 IPR020575 -
Cone1ag1191 705 PRINTS 90kDa heat shock protein signature 32 54 IPR020575 -
Cone1ag1191 705 PRINTS 90kDa heat shock protein signature 99 116 IPR020575 -
Cone1ag1191 705 PRINTS 90kDa heat shock protein signature 124 146 IPR020575 -
Cone1ag1191 705 PRINTS 90kDa heat shock protein signature 176 193 IPR020575 -
Cone1ag1191 705 PRINTS 90kDa heat shock protein signature 194 212 IPR020575 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1191 K04079 - - rcu:8277096 1230.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1246 Cone-Chr14:10057079 Cone1ag1191 Cone-Chr1:55855561 0 dispersed
Cone15ag1271 Cone-Chr15:9997019 Cone1ag1191 Cone-Chr1:55855561 0 dispersed
Cone1ag1191 Cone-Chr1:55855561 Cone4ag1980 Cone-Chr4:13886786 1.91E-214 dispersed
Cone1ag1191 Cone-Chr1:55855561 Cone5ag0892 Cone-Chr5:3835454 0 wgd
Cone1ag1191 Cone-Chr1:55855561 Cone6ag0804 Cone-Chr6:4086932 4.31E-41 wgd
Cone1ag1191 Cone-Chr1:55855561 Cone9ag0802 Cone-Chr9:3849344 6.42E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g762 Blo06g01136 Blo15g00109 . . . . . . Cmo16g00105 . . . . . . . Cpe14g00083 . . . . . . . . . . . . . . Cone1ag1191 Cone5ag0892 . . Lsi05g01193 . . . . . . Bda15g00711 . Bpe12g00442 Bma08g00293 . . . . Cma16g00098 . Car16g00088 . . . . . . . . . . . . . . . . . . Csa03g01748 Chy06g00977 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000587 3 3 3 2 4 2 5 5 4 3 3 3 4 4 3 4 3 7 3 3 3 4 5 0 4 3 1 4 4 3 102