Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1195 ATGGCAGCAAATGATGTTCCATGTTGTGAGCCAATGTTCTGGGTGTATCTAGTTATATGTGTAGGTATTGTGGTTTTTGCTGGCCTTATGTCAGGCCTTACGTTAGGACTCATGTCTCTCAGCCTGGTCGACCTCGAGGTCTTGGTCAAGGCCGGTCGGCCACAAGACCGAAAGAATGCAGGTCGAGCTATTAATTCATTAGTGTGGATGGCAGCTAAGATTTTACCCATAGTCAAGAACCAGCACTTGCTCCTATGCACCCTCCTTATAAGCAACTCTTTGGCAATGGAGGCGCTGCCGATATTCCTCGACGCGCTACTCCCGGCTTGGGGCGCAATACTAATATCAGTCACTCTCATCCTTGCATTTGGTGAGATAATCCCTCAAGCAATATGTTCACGGTATGGATTGAGTGTTGGGGCGAAACTGTGTATTGTAGTCCGCTTTCTTGTTCTGCTCCTCTTTCCGTTAGCTTACCCCATCAGCAAGCTGCTGGATTGGATACTGGGAAAAGGGCATTCTGCGCTTTTAAGAAGGGCTGAGCTTAAGACATTTGTGGATATGCATGGAAACAAGGCAGGGAAAGGTGGAGAATTGAGTCAGGATGAAACAACCATCATCGCTGGAGCTTTAGACATGAGTTTGAAAACTTCAAAGGATGCAATGACCCCTCTATCTCGTGTCTTCTCCCTTGATGTCAATTCCAAGCTAGATGAGTATGCCCCATCTTCCTTCCTAGTAAAAAGTTTGATCAAATATAGTCCCGAAAATGAAATTTCAGTCAAGGATCTCGCCATCAGAACAATTCCTAGGGTACCCGAAAACTTGCCTCTCTATGATATCTTGAACCAATTCAAAGGGGGGAACAGCCATATGGCTTTTGTTGTTAAAACCGGTACTACTAAACAAATAAGCTGGCCGGAGAGTACTACTCATGCACGAGGAATAAATACACCAACCGGGAAAACACTAGCACATGATAGAGCGGTTGTTCATGAACAAACGAAGCATGATGAAGAGATTATTGGTATCATAACTCTTGAGGATGTCATGGAGGAACTTTTACAGGAAGAGATATTGGATGAGACTGATGAGTATACTGCTATCCACAACAAGCTTATTGTGAATATGCAAGCTTCTAGAAGATCACCGGCATTATCATCTTCATCGCCACAACTTTCTCATCAATCCTACCATTCTCCAATCTCTTCATACAATCATAGTCCAATTCTTCATTCGCCAATCCCTCCCTACATTCCCTCACCACTTATAAGACCAGTTCTATCTTCTTCCCCTACAAAGTTTGTACACATTTCCACAACCGGCTATGCTTCTCCGATCGGTGCTTCACTGGCTCCTCCTATGGTTTCGAGAAAATTATATGATAAATTAAGACAGACCGGCGAGTCATAA 1413 44.09 MAANDVPCCEPMFWVYLVICVGIVVFAGLMSGLTLGLMSLSLVDLEVLVKAGRPQDRKNAGRAINSLVWMAAKILPIVKNQHLLLCTLLISNSLAMEALPIFLDALLPAWGAILISVTLILAFGEIIPQAICSRYGLSVGAKLCIVVRFLVLLLFPLAYPISKLLDWILGKGHSALLRRAELKTFVDMHGNKAGKGGELSQDETTIIAGALDMSLKTSKDAMTPLSRVFSLDVNSKLDEYAPSSFLVKSLIKYSPENEISVKDLAIRTIPRVPENLPLYDILNQFKGGNSHMAFVVKTGTTKQISWPESTTHARGINTPTGKTLAHDRAVVHEQTKHDEEIIGIITLEDVMEELLQEEILDETDEYTAIHNKLIVNMQASRRSPALSSSSPQLSHQSYHSPISSYNHSPILHSPIPPYIPSPLIRPVLSSSPTKFVHISTTGYASPIGASLAPPMVSRKLYDKLRQTGES 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55864263 55867096 - Conep01aG0124400.1 Cone1ag1195 431886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1195 470 Gene3D - 244 362 IPR046342 -
Cone1ag1195 470 Gene3D - 201 243 IPR046342 -
Cone1ag1195 470 Pfam Cyclin M transmembrane N-terminal domain 19 202 IPR002550 -
Cone1ag1195 470 SUPERFAMILY CBS-domain pair 207 356 IPR046342 -
Cone1ag1195 470 ProSiteProfiles CNNM transmembrane domain profile. 9 203 IPR002550 -
Cone1ag1195 470 PANTHER METAL TRANSPORTER CNNM 7 241 IPR045095 GO:0005737(PANTHER)|GO:0010960(InterPro)|GO:0030026(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1195 K16302 - - csv:101210102 506.908
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1195 Cone-Chr1:55864263 Cone3ag1056 Cone-Chr3:29288474 6.66E-125 dispersed
Cone1ag1195 Cone-Chr1:55864263 Cone15ag0060 Cone-Chr15:349849 3.60E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g773 . . . . Bpe03g00157 . . . Cmo16g00103 . . . . . Sed13g0543 . Cpe14g00080 Bhi01g01589 Tan01g0786 . . . Mch10g0553 . . . . . . . . Cone1ag1195 . . Cone15ag0060 Lsi05g01188 . . . . Blo09g00058 . . . . . . . . . Cma16g00096 . Car16g00086 . . . . . . . . . . Cla05g00919 Cam05g1007 Cec05g1011 Cco05g1007 Clacu05g0995 Cmu05g0950 Cre05g1031 . Csa03g01752 Chy06g00981 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007021 1 9 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37