Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1203 ATGGCTAATCATGATCATCTAAGAGCTTGTTCATGGGTAGTTTTGTTGTTGATGGTAGTGATTATGGGAGGAGGGCTTAGATATCATAATGGTCATGGTTGTTGCATGGGAAGCCAGTTGATTGATCTGGGTTCAAAATTGTTGGCCCGTGAAGAAAACAGAGCATGGATTTCTGAAAACTCAACCTTTGCATTTGGGTTCACTCCATTATCTCGATCTTCTCATCAGTTTCAGTTAGCGATTTGGCTTCCACAGCTTCCTGGAGATACCACTCTTGTTTGGTCGGCTAAAAGAAACACTCCGGTGACGATGGATGCGATCGTAGAGCTGGACCGGACCGGAAACTTAATCCTCAGTGACGGAGGGGCCACCGTATGGGCCTCAAACACTTCCGGTGCGGGGGTCCAGTTCGCTGTCATGTCCGAAACCGGAAACTTCATCCTCTTGAACGCAGACAACCGTCCTCTCTGGCAAAGCTTTTCACATCCATCGGATACTCTTCTCCCGAACCAGCCATTGTCAGTCTCTTCAGAGCTCACAAGCACTGCCAAATCACCCTCCCATGGCGGGTACTTCTCCTTAAAAATGCTCCAGCAACCCACTTCCTTAAGCCTCTCCCTGACCTTCAACTTGCCCGATCATAAAAGCTTCGCAAATTATTCATACTGGTCTGGACCTGATATATCGAACGTTACAGGAGATGTTATTGCAGTTTTAGATGAAGCAGGAAGCTTTGGACTTGTCTATGGTGATTCTTCAGATGGAGCAGTATATGTTTATAAAAATGATTTGGATAATGGAGGGTTATCTAAACCAGAAAATGTGTCCCTTTCAATGAGCCTCTCAACCGTTCGACGAATTTCCATAGAGAGCAACGGGAATTTACGGTTATACCGTTGGGACAATGATGTTAATGGGTCCCGCCAGTGGGTCCCGGAATGGGCTGCCATGTCTAATCCATGCGAAATTGCTGGAACTTGTGGTAATGGAATATGTAGATTGGACAGAAGCAAAACCAATGCTTCTTGTTCATGCTTGCCTGGAACCTGTAAGGATGATGTTAATGATGGCTTATGCTTTGAGAATAATTCATCATCTTTGATCGGGAAATGTGAGTTATCGGAGAGTGAGAACCGATCCATGGATTTTAGAATGGCAATGGTGCAGCAAACAAATTACTATTTCTCTGAAATTTCTGTGATTGTGAATTATAGTGATATTGATTCTGTATCTAAATGTGGGGATGCTTGTTTATTGAATTGTGAATGTGTTGCTTCGGTTTACGGGCTTGATGATGAGAAACCCGTTTGTTGGGTGTTAAAGAGCTTGGATTTTGGTGGGTTTGAGGACCCAAGTTCGACCCTTTTTGTGAAAGTTAGATCCAATGGATCTAATAGTGATAATGAAGGAGGAGGATCTGGTGATGCTGATGAGGGTTCTTCAAAAGGAGGATTAGGGAATGGGAGAGAGAAGGTTTTGGTTATTCCTATTGTGTTAAGCATGACTTTTCTTATCGCGCTACTTTGCCTTTTGCTGTATTACAATGTTCATAGGAGGATGCAAATGAGAAGAGCTATGGAGCAGTCTTTGATCCTATCTGGTGCTCCCTTGAGTCTCACTTACCGGGATTTGCAAATTGGAACAAGTAATTTTTCCCAGCTGCTTGGAACAGGGGGATTTGGGAGTGTGTATAAGGGAAGCCTTGGAGATGGAACTTTAATTGCAGTAAAGAAACTCGAGAGAGTTTTTCCTCATGGTGAGAAGGAATTCATAACTGAAGTAAACACTATTGGATCAATGCATCACATGAACTTAGTCCGTCTTTGCGGATACTGCTCTGAGGGATCTCAGAGGCTGCTTGTTTACGAGTTCATGAAAAACGGATCACTAGATAAATGGATCTTCTCATCATATCAAAGTGGAGATAGAGTCTTAGGTTGGGCATCTAGGTTTCAAATAGCAATAGCCACAGCACAAGGAATTGCTTATTTCCACGAACAATGTAGGAATAGAATCATACACTGTGACATAAAGCCGGAGAACATATTACTGGACGAAAACTTCTGTCCAAAAGTATCAGATTTTGGGCTGGCAAAGCTCATGGGAAGGGAACATTCTCATGTTGTAACTATGGTTAGAGGAACTAGAGGATATTTAGCTCCTGAGTGGATCAGTAATCGCCCCATTACTGTAAAAGCCGACGTTTATAGCTATGGAATGCTTCTTCTGGAGATTATTGGTGGCAGGAGAAACCTTGACATGTCTTATGATGCAGAAGACTTCTTCTATCCTGGCTGGGCCTTTAAGGAGATGACAAGTGGGACCTTATTGAAAGTTGCAGATAGGAGGCTAAATGGTGCAGTAGATGAAGAAGAGTTGAAGAGAGCTTTAAAAGTTGCATTTTGGTGCATTCAAGACGAGGTGTCAGTGAGACCAACAATGGGGGAAGTGGTGAAGATGTTGGAAGGATCGATTGATACGATTAATACTCCGCCAATGCCGCAAACGGTACTGGAATTGATGGAGGAAGGTTTAGAATGTGCATATAGAGCCATGAAAAGGGACTGTAATCAATTTAGTTCCTTCACTGTAAATACTACTATTCATCCTTCTTCTTCTCATGCTACATGTAGTTACTCCACCATGTCTCCTAGATAA 2658 42.93 MANHDHLRACSWVVLLLMVVIMGGGLRYHNGHGCCMGSQLIDLGSKLLAREENRAWISENSTFAFGFTPLSRSSHQFQLAIWLPQLPGDTTLVWSAKRNTPVTMDAIVELDRTGNLILSDGGATVWASNTSGAGVQFAVMSETGNFILLNADNRPLWQSFSHPSDTLLPNQPLSVSSELTSTAKSPSHGGYFSLKMLQQPTSLSLSLTFNLPDHKSFANYSYWSGPDISNVTGDVIAVLDEAGSFGLVYGDSSDGAVYVYKNDLDNGGLSKPENVSLSMSLSTVRRISIESNGNLRLYRWDNDVNGSRQWVPEWAAMSNPCEIAGTCGNGICRLDRSKTNASCSCLPGTCKDDVNDGLCFENNSSSLIGKCELSESENRSMDFRMAMVQQTNYYFSEISVIVNYSDIDSVSKCGDACLLNCECVASVYGLDDEKPVCWVLKSLDFGGFEDPSSTLFVKVRSNGSNSDNEGGGSGDADEGSSKGGLGNGREKVLVIPIVLSMTFLIALLCLLLYYNVHRRMQMRRAMEQSLILSGAPLSLTYRDLQIGTSNFSQLLGTGGFGSVYKGSLGDGTLIAVKKLERVFPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSQRLLVYEFMKNGSLDKWIFSSYQSGDRVLGWASRFQIAIATAQGIAYFHEQCRNRIIHCDIKPENILLDENFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWISNRPITVKADVYSYGMLLLEIIGGRRNLDMSYDAEDFFYPGWAFKEMTSGTLLKVADRRLNGAVDEEELKRALKVAFWCIQDEVSVRPTMGEVVKMLEGSIDTINTPPMPQTVLELMEEGLECAYRAMKRDCNQFSSFTVNTTIHPSSSHATCSYSTMSPR 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55909891 55913003 + Conep01aG0125200.1 Cone1ag1203 431894

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1203 885 Gene3D - 44 162 IPR036426 -
Cone1ag1203 885 Gene3D Phosphorylase Kinase; domain 1 513 624 - -
Cone1ag1203 885 MobiDBLite consensus disorder prediction 463 483 - -
Cone1ag1203 885 SUPERFAMILY alpha-D-mannose-specific plant lectins 92 176 IPR036426 -
Cone1ag1203 885 Gene3D Transferase(Phosphotransferase) domain 1 625 836 - -
Cone1ag1203 885 PANTHER OS07G0415500 PROTEIN 41 855 - -
Cone1ag1203 885 SUPERFAMILY Protein kinase-like (PK-like) 530 822 IPR011009 -
Cone1ag1203 885 ProSiteProfiles Protein kinase domain profile. 549 825 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1203 885 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 625 832 - -
Cone1ag1203 885 SMART serkin_6 549 821 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1203 885 Pfam S-locus glycoprotein domain 273 348 IPR000858 GO:0048544(InterPro)
Cone1ag1203 885 Pfam D-mannose binding lectin 91 178 IPR001480 -
Cone1ag1203 885 CDD STKc_IRAK 555 823 - -
Cone1ag1203 885 FunFam Serine/threonine-protein kinase 42 161 - -
Cone1ag1203 885 SMART blect_4 47 163 IPR001480 -
Cone1ag1203 885 FunFam serine/threonine-protein kinase PBS1-like 517 624 - -
Cone1ag1203 885 PIRSF SRK 9 873 IPR024171 GO:0004674(InterPro)
Cone1ag1203 885 ProSitePatterns Protein kinases ATP-binding region signature. 555 578 IPR017441 GO:0005524(InterPro)
Cone1ag1203 885 ProSiteProfiles Bulb-type lectin domain profile. 41 161 IPR001480 -
Cone1ag1203 885 Pfam Protein kinase domain 552 819 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1203 885 CDD B_lectin 58 163 IPR001480 -
Cone1ag1203 885 ProSitePatterns Serine/Threonine protein kinases active-site signature. 672 684 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1203 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1203 Cone-Chr1:55909891 Cone4ag1231 Cone-Chr4:10246847 1.13E-138 dispersed
Cone1ag1203 Cone-Chr1:55909891 Cone5ag0905 Cone-Chr5:3880989 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g814 . . . . . . . . . . . . . . . . . Bhi01g01426 . . . . . . . . . . . . . Cone1ag1203 Cone5ag0905 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g02176 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008718 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82502 PF03070 TENA_THI-4 2.30E-06 CL0230 Cone PK