Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1209 ATGTTCCATTCAGTCCGCTGTGACCCGTCGAGGAACCGGCCTTGCCGGCAAGACTCATGTGCCTCTGGACAGCCCAAAGAGAAATCCACCTCTTCCGGCGCAATCTGCATCCCGTCTGGCCCTTTCAGGCAGGTTCTGGACCCGCGTGGAGCTCGAGTCCAGAGGTGGAACCGCATTGTTCTGTTGGCTCGTGGAATAGCTCTGGCCATTGATCCTCTCTTCTTTTACGTGATTTCGTTGAGCAAGAGTGGGGCCCCTTGCTTCTACATGGATGTAAAGCTGGCCATATTCGTTACCCTCGTTCGCACGTGTCTTGATCTGGTTCATTTGAGCTACGTGTTGCTGCAGTTCAGGTTGGCTTACTTGTCTACGGAGTCAATGATGGTTGGGTGTGGCAAGCTGGTTTGGGACGCTCGTGCCATTGTTTCTCACTACTTGCGCTCCATCAAAGGCTTCTGGCTGGATGTGTTTGTGATTCTTCCTTTGCCTCAGGTTGTAATATGGTTAGTTGCACCAAAACTGCTTAGTGAAGAACGGATCAAGCTGATAATGATTATACTTCTAATCACCTACTTAATCCAATTCCTTCCACAATTCTACCATAACATGTACTTGCTCAAGAAACTTCAAAAAGTCACCGGATTCATCTTCGGCGGCGTTTGGTGGCGGTTCATCCTCAACGTCGTTGCCTACTTAATTGCATCTCATGTTGCGGGAGGATGTTGGTATGTACTGGCGACACATCGTTTAGTATCATGTCTCCAACAGCGGTGTGAAGCAAGTAAGACGTGCAACCTCTCTATGCTTTGCTCGAACAGAGATTGTTACGACGGCTCCGAATTTACGGGAAGTTCGCTGGGGAGTGCATGCAACAGTAGGAAGCTAACAAGGATAAAATCATTGTGCTTGGAGAGTGACGGGCCCTTCGACTACGGCATTTATGAACCAATGCTTCTTGTCTTCTCCAGCAATTCCCTGCTTAACCGTATTCTTTATCCTATCTTATGGGGTTTGTTAAATCTCAGCTCCTTTGCTAATAATCTTCAGCCTACAACTAATCCTGTGGAAGTACTCTTCTGTTGTACCATCACACTTGCGGGCATGGGGTTATTCGTTACATTGATCGGAAATATTCAAATATTTTTGCAGACTGTACTGGCAAATAAGGAAAGAATGCAGCTCAGGTTTGGGGACCTAGAATGGTGGATGAGAAGACGACAATTGCCGTCTCGTATGAGAGAAAGGGTTCGACATTTTGAATTTCAAAGATGGATGACTATGGGGGGCCAAGATGAGACGGAACTGCTTCGTGATCTGCCGGATGGACTCCGGAGAGAAATCAAATGTTATCTTTATTCAGACTTGGTCAAGAAGGTGCCACTGTTTCGGATGTTGGATGATCTTATACTAGACAACATTTGTGATAGAGTTAAACCCCTTTTGTTCTCCAAGGGTGAAAATATAGTTAGAGAGGGAGATCTTGTACAAAGAATGGTTTTTATTGTTCGGGGATCTGTCCGACGTAGCCAAGGCTACGGCGAACACATCTTAACCACAAGTTTGCTGGAAACCGGAAGCTTTTTTGGCGACGAGCTACTCTCTTGGTGTCTTCGCCGCCCATTTGTGGACAGGCTTCCAGTCTCATCTGCCACATTTGTTTGTGTTCAATCAATAGAAGCTTTCGGGCTCGATGCTTATGATCTTAGATATATTACTGGCCACTTTCGTTACGAATTTGCTAGTGAGAGGCTTAAATGGACTGCTCGATATTATTCATCGAATTGGCAATCTTGGGGTGCTATGGTCATTCAATCAGCTTGGCGCCGGTTCCAGGCCAAAACTAAGAGTGTTAGGATGCAAAATGTTGTTGCTGAGAATAAGTTGAGGCAATTCGTTGATGCATTTTTATCGCTCAGACGACATGACCACCTCGAATGA 1938 46.13 MFHSVRCDPSRNRPCRQDSCASGQPKEKSTSSGAICIPSGPFRQVLDPRGARVQRWNRIVLLARGIALAIDPLFFYVISLSKSGAPCFYMDVKLAIFVTLVRTCLDLVHLSYVLLQFRLAYLSTESMMVGCGKLVWDARAIVSHYLRSIKGFWLDVFVILPLPQVVIWLVAPKLLSEERIKLIMIILLITYLIQFLPQFYHNMYLLKKLQKVTGFIFGGVWWRFILNVVAYLIASHVAGGCWYVLATHRLVSCLQQRCEASKTCNLSMLCSNRDCYDGSEFTGSSLGSACNSRKLTRIKSLCLESDGPFDYGIYEPMLLVFSSNSLLNRILYPILWGLLNLSSFANNLQPTTNPVEVLFCCTITLAGMGLFVTLIGNIQIFLQTVLANKERMQLRFGDLEWWMRRRQLPSRMRERVRHFEFQRWMTMGGQDETELLRDLPDGLRREIKCYLYSDLVKKVPLFRMLDDLILDNICDRVKPLLFSKGENIVREGDLVQRMVFIVRGSVRRSQGYGEHILTTSLLETGSFFGDELLSWCLRRPFVDRLPVSSATFVCVQSIEAFGLDAYDLRYITGHFRYEFASERLKWTARYYSSNWQSWGAMVIQSAWRRFQAKTKSVRMQNVVAENKLRQFVDAFLSLRRHDHLE 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55940193 55942843 + Conep01aG0125800.1 Cone1ag1209 431900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1209 645 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 43 617 - -
Cone1ag1209 645 Gene3D Jelly Rolls 459 577 IPR014710 -
Cone1ag1209 645 Gene3D Helix hairpin bin 387 451 - -
Cone1ag1209 645 SUPERFAMILY Voltage-gated potassium channels 47 383 - -
Cone1ag1209 645 MobiDBLite consensus disorder prediction 15 34 - -
Cone1ag1209 645 SUPERFAMILY cAMP-binding domain-like 388 575 IPR018490 -
Cone1ag1209 645 ProSiteProfiles cAMP/cGMP binding motif profile. 461 540 IPR000595 -
Cone1ag1209 645 MobiDBLite consensus disorder prediction 1 34 - -
Cone1ag1209 645 CDD CAP_ED 461 541 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0485 Cone-Chr16:6972025 Cone1ag1209 Cone-Chr1:55940193 4.78E-266 dispersed
Cone1ag1209 Cone-Chr1:55940193 Cone2ag0531 Cone-Chr2:2929772 4.40E-263 dispersed
Cone1ag1209 Cone-Chr1:55940193 Cone14ag0024 Cone-Chr14:200364 3.39E-76 wgd
Cone1ag1209 Cone-Chr1:55940193 Cone15ag0027 Cone-Chr15:201417 1.89E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1209 K05391 - mdm:103439584 798.89