Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1210 ATGTGCAGTGGATCCAAGAACAAACTTGGTGCCTCAAATCCGATCATGGAAAACCAATTTCATAAACAGAAGAATGATAAAGCTTTCTGCAAATGCTCCGTCCTACTCGAATTCGCTGCTTCCGATGACGTGGAAGGCTTTAAGAGAGTAGTAGAAGAAATGGGTCTGGACATGGATGAGCCTAGTTTCTGGTATGGAAGATCAATTGGGTCTAAAAAGATGGGATTTGAAGAAAGAACACCCCTCATGATTGCTGCCTTGTTTGGAAGTACAAAGGTCTTGAACTACTTACTCCGTACCGGAGCGGTTGATGTTAACCAAGCTTCCCGTTCAGATAAGGTCACTGCCCTTCACTGTGCCAGTGCTGGAGGGTCCCACTCTTCGATCAAAACCGTCAAGCTTTTGCTCAGTTCATCTGCTATTTCCGATTGCGTAGATTCAAACGGGGACAAACCGGTTGATGTGATCGCTCCGGCTTTCAATTCAATGGGAAATTCACGGAGGAAGGCAGTTGAAATGTTGCTCAAAGGCAATGATAATCCACTAGAAGAAGAAGAAGAAGAAGATACGAAAGTTTTATTGCTCCACCCATCTAAAGAAGGATCTGACAAGAAAGAATATCCTGTTGATATCTCCTTGCCGGATATAAACGAAGGGATTTATGGATCAGATGAGTTCAGAATGTACAGTTTCAAGGTGAAGCCTTGTTCTAGGGCATACTCTCACGACTGGACGGAGTGTCCCTTCGTTCATCCCGGCGAGAACGCCCGCAGGCGGGACCCGAAGAAGTTCCCTTACAGCTGCGTTCCTTGCCCGGAATTCCGTAAAGGTTCTTGCCAGAAGGGAGATTCTTGTGAATACGCGCATGGCGTTTTTGAATCTTGGCTCCACCCTGCCCAATACCGGACCAGGCTCTGCAAAGATGAAACCGTTTGCAATCGAAAGGTCTGCTTCTTTGCCCACAGGCCCGAAGAGCTTCGACCTGTTTATGCTTCCACCGGCTCGGCCCTACCTTCCCCTCGGTTTAATTCGGTTAGTTCAGCTGACATGTCATTCCCAACTCCATCAGCTCACGTCCCATTGACTTCAACCCCGCCCATGTCTGCATTAGCCAGCGCCACATTATCGCCGAAGAATGGAAGCTTGTGGACCCCACCAGCGCTGCAGCTTCCAAGTAGTCGGTTAAAAACTGCTTTGAGTGCGAGAGATTTGAATGTAGAGATGGAATTGATGGATGAGATTTCGCGTCTCTCCTCTCCTAACCGTTGGAGTGGTAAAGATTTCTGCAGGGAATCTTTAGATTCTTCTTCCAGCCTGTCTCAGATGCAGGGAATCTCGCTGAATTCTCCAACTGGGCTTTCAATCCGGCAAAACATGAACCGGCTCCGAGCTAGCTACCCCACTACCAATGCCATGTTATCATCCTCAACTTCGTGGAAGCCCTCCTCATTTGGTTTCGACTCCTCTGCAGCAGTAGCTGCGGAGGTTATGAATTCTCGATCAGCTGGGTTTGCAAAGCGGAGCCAGAGTTTTATTGATCGGGCAGCAGTGAATAATATACCCGGGCAGAGTATGATGTCATCAAACCATCTTTCGGATTGGGGCTCACCCAATGGGAAACTGGATTGGGGTGTTCAGGGAGATGAACTCAATAAACTGAAGAAATCTGCTTCATTCGGGATCAGAAACAACATGAATGTTGGAAAACCAGTTGTAGATGAACCCGATGTTTCGTGGGTTAATTCATTGGTGAAGGATGTTCCTTCCGAGAATTCTGGTAGGTTTGGAGCTTATGAGAGGCTTCCGCCATGGTTGGAGCAGCTGTACATGGATCAGGATCGCATCGCGGCGTAA 1854 47.79 MCSGSKNKLGASNPIMENQFHKQKNDKAFCKCSVLLEFAASDDVEGFKRVVEEMGLDMDEPSFWYGRSIGSKKMGFEERTPLMIAALFGSTKVLNYLLRTGAVDVNQASRSDKVTALHCASAGGSHSSIKTVKLLLSSSAISDCVDSNGDKPVDVIAPAFNSMGNSRRKAVEMLLKGNDNPLEEEEEEDTKVLLLHPSKEGSDKKEYPVDISLPDINEGIYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKFPYSCVPCPEFRKGSCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETVCNRKVCFFAHRPEELRPVYASTGSALPSPRFNSVSSADMSFPTPSAHVPLTSTPPMSALASATLSPKNGSLWTPPALQLPSSRLKTALSARDLNVEMELMDEISRLSSPNRWSGKDFCRESLDSSSSLSQMQGISLNSPTGLSIRQNMNRLRASYPTTNAMLSSSTSWKPSSFGFDSSAAVAAEVMNSRSAGFAKRSQSFIDRAAVNNIPGQSMMSSNHLSDWGSPNGKLDWGVQGDELNKLKKSASFGIRNNMNVGKPVVDEPDVSWVNSLVKDVPSENSGRFGAYERLPPWLEQLYMDQDRIAA 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55944624 55947400 - Conep01aG0125900.1 Cone1ag1210 431901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1210 617 SMART c3hfinal6 300 323 IPR000571 GO:0046872(InterPro)
Cone1ag1210 617 SMART c3hfinal6 265 291 IPR000571 GO:0046872(InterPro)
Cone1ag1210 617 PANTHER UNKEMPT FAMILY MEMBER 70 586 IPR045234 -
Cone1ag1210 617 SMART ANK_2a 112 144 IPR002110 GO:0005515(InterPro)
Cone1ag1210 617 SMART ANK_2a 77 107 IPR002110 GO:0005515(InterPro)
Cone1ag1210 617 ProSiteProfiles Ankyrin repeat region circular profile. 77 102 - -
Cone1ag1210 617 Pfam Ankyrin repeats (3 copies) 74 138 IPR002110 GO:0005515(InterPro)
Cone1ag1210 617 SUPERFAMILY Ankyrin repeat 32 156 IPR036770 -
Cone1ag1210 617 Gene3D - 9 204 IPR036770 -
Cone1ag1210 617 Gene3D - 266 328 - -
Cone1ag1210 617 ProSiteProfiles Ankyrin repeat profile. 77 102 IPR002110 GO:0005515(InterPro)
Cone1ag1210 617 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 269 290 IPR000571 GO:0046872(InterPro)
Cone1ag1210 617 FunFam Zinc finger CCCH domain-containing protein 66 223 291 - -
Cone1ag1210 617 ProSiteProfiles Zinc finger C3H1-type profile. 265 292 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1210 Cone-Chr1:55944624 Cone3ag0063 Cone-Chr3:379515 6.70E-123 dispersed
Cone1ag0567 Cone-Chr1:5761316 Cone1ag1210 Cone-Chr1:55944624 3.66E-196 wgd
Cone1ag1210 Cone-Chr1:55944624 Cone11ag1236 Cone-Chr11:9259938 2.94E-122 wgd
Cone1ag1210 Cone-Chr1:55944624 Cone18ag0358 Cone-Chr18:1739191 1.79E-124 wgd
Cone1ag1210 Cone-Chr1:55944624 Cone5ag0196 Cone-Chr5:813615 0 wgd
Cone1ag1210 Cone-Chr1:55944624 Cone5ag1074 Cone-Chr5:4765337 4.30E-195 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45496 PF00657 Lipase_GDSL 5.90E-24 CL0264 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1210 - - - 0.0