Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1213 ATGACGAAGTTTCCTCTTACCATTTCGATCACCTTCACCGTCATCTTACTTATCGTCAAATTTGTCGCTCCAATCCATGCACTCGGCTCCGGCTCAACCCTCGCTGTTAGCTACGGCTCCTCCACCGTCTGCGGCATCGTCGCCGAGCAGCAGACACAACGCATACTCTGCTTCCGAAACGGTCAAATCCTCTACATAGAACCCGATATCTCATTCTCATCCATTTCCGGCGGAGAAAACACCTTCTGCGGCGTTCGCTCAGGCGGCTACAGTCTTCTCTGCTGGGACTATGACTTTTCAAACTCCACCTTCTCACGCAAACGACTCTACTACAACGACACCTTTTCACTCGATAGCGTCTCAATCGGCGACGGTCAAATTTGCGCCACGTTGGCTAATACCGGTAATGTTCGTTGCTGGAGACAAGGTATTGGGTCCAAGGAAATACCGTCCGAACAGCTTCTCTCGACCTCGTCCGGATTCGGGTTTTCTTGCGGGTTACTGAAAACCAATAGATCGGTTCGATGCTGGGGAAGTAACGATTCAATAGCCAGGCAGATCGAGAACGAGTTTACGAATGTTTCAATGCTGAGTCTTGTTGCAGGTGGGTCTCACGTATGCGGATTGAACTTTACCGGATTTTTAATCTGCAAAGGAAACAATGATTTCGGGCAATTGGATATACCGTCGGATACGGTTTCGGATTTCTCCGAATTAGCACTCGGAGCCAGCCATAGCTGTGGAATCCGACAATCGAATCGAACTGTGGTTTGTTGGGGAAACGGCGGGAACTTATCAGTTAATGAAATTCAGGAAATTTCGTTCGAGCTAATCACTTCTGGCTCGAATTTCACTTGTGGATTAACTTCTAGTAATCTTACTGTTATGTGTTGGGGACCGGGTTGGTTTCAATCAAGTTCTTTTTCTATCTCTCTCCCGAAGATTCTTCCCGGTCCTTGCGTTGAATCGCTGTCGCTGTGCAGTGAGTGCGGTATATATCCTCTGTCTCAATCTCTCTGTTCCTCTGGTTCCGAGAATGTTTGCAAACGTTGTCTTTCTCAAGCTCCAGTCTGGACCCCACCACCCCCGCCAATTTCGCTTCCAGCACCTTCACCATCCAGAGCTTTAACAAGAGGTTTACTGGCCTTTGCCATTGTCGGATCAGTCGGAGCATTTGCAGGTATATGCTCTGTTATTTACTGTTTATGGACTGGAGTTTGTTTCGGGCACAAAAAGATACACAATTCAGTCCAACCGACGATCACTAGAGCAGCCAGTTCAAACGGCGTTTCAACATCAAACACTAATAATAATAATAATAATAGTAATAATAACAACAATAGTCCGCCTTCAAGATCGTCTACTATTCGGCGACAGGGGTCCAGACTTATGAGACGACAGAGAAGCGGAACATCATCAAAGCATACGGATAAAGCAGAGGAGTTTTCTCTAACCGAGCTGGCAGTAGCAACCAATGATTTCTCTCTAGAAAACAAGATCGGAGCTGGAAGTTTTGGGGTCGTGTACAAAGGGAAGTTATCAGACGGTCGTGAGGTAGCGATCAAGAGAAGCGAAACGGGTCTTAAGACGAAGAAATTCCAAGAGAAAGAAAGCGCGTTTGACTCGGAACTGGCGTTCATGTCCCGCCTTCATCACAAGCATTTAGTAAGGCTTGTTGGTTATTGCGAAGAGAAGGAGGAGAGACTCCTCGTTTACGAGTACATGAAAAATGGTGCGCTTTACGATCATTTACATGACAAAAACAACGTCGAGAAGAGCAGTAGTGTTTTGAATTCGTGGAAAATGAGGATCAAGATTGCTCTAGATGCGGCTCGGGGAATCGAGTATCTTCACAATTACGCTGTCCCTCCGATAATTCACCGAGACATAAAGTCATCTAACATACTCCTCGACGGGAACTGGACAGCCCGAGTGTCGGATTTTGGGCTGTCATTAATGGGCCCGGAATCGGACCAGGATTACAGACCGACAAAAGCGGCTGGGACGGTTGGTTATATCGATCCGGAATACTATGGGCTTAATGTGCTGACAGCAAAGAGTGATGTTTATGGGCTAGGGGTTGTGTTGTTGGAGCTTTTGACAGGGAAGAGGGCGATATTTAAGAGTGGGGGGAATGGAGGGGGTGCAGCGCCTATAAGTGTGGTGGATTTTGCGGTGCCGGCAATCATGGCGGGCGAATTGGGGAGGCTTTTGGACAGTAGAGTGGGGAAGTTGGAGATGAATGAAGGGGAGGCGGTTGAGCTGGTGGGTTATACGGCGATGCATTGTGTTAATTTGGAAGGGAAAGAGAGGCCTACAATGACTGACATTGTTTCTAATTTGGAGCGAGCTTTGGCTCTCTGTGATGATAGCCATGGCAGCATCTCTAGTGGCGCCATTTCCATTGTTTCTGATTGA 2418 47.44 MTKFPLTISITFTVILLIVKFVAPIHALGSGSTLAVSYGSSTVCGIVAEQQTQRILCFRNGQILYIEPDISFSSISGGENTFCGVRSGGYSLLCWDYDFSNSTFSRKRLYYNDTFSLDSVSIGDGQICATLANTGNVRCWRQGIGSKEIPSEQLLSTSSGFGFSCGLLKTNRSVRCWGSNDSIARQIENEFTNVSMLSLVAGGSHVCGLNFTGFLICKGNNDFGQLDIPSDTVSDFSELALGASHSCGIRQSNRTVVCWGNGGNLSVNEIQEISFELITSGSNFTCGLTSSNLTVMCWGPGWFQSSSFSISLPKILPGPCVESLSLCSECGIYPLSQSLCSSGSENVCKRCLSQAPVWTPPPPPISLPAPSPSRALTRGLLAFAIVGSVGAFAGICSVIYCLWTGVCFGHKKIHNSVQPTITRAASSNGVSTSNTNNNNNNSNNNNNSPPSRSSTIRRQGSRLMRRQRSGTSSKHTDKAEEFSLTELAVATNDFSLENKIGAGSFGVVYKGKLSDGREVAIKRSETGLKTKKFQEKESAFDSELAFMSRLHHKHLVRLVGYCEEKEERLLVYEYMKNGALYDHLHDKNNVEKSSSVLNSWKMRIKIALDAARGIEYLHNYAVPPIIHRDIKSSNILLDGNWTARVSDFGLSLMGPESDQDYRPTKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKSGGNGGGAAPISVVDFAVPAIMAGELGRLLDSRVGKLEMNEGEAVELVGYTAMHCVNLEGKERPTMTDIVSNLERALALCDDSHGSISSGAISIVSD 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55958536 55961080 + Conep01aG0126200.1 Cone1ag1213 431904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1213 805 SUPERFAMILY Protein kinase-like (PK-like) 471 781 IPR011009 -
Cone1ag1213 805 Pfam Protein kinase domain 495 712 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1213 805 MobiDBLite consensus disorder prediction 425 478 - -
Cone1ag1213 805 Gene3D - 151 332 IPR009091 -
Cone1ag1213 805 Gene3D Phosphorylase Kinase; domain 1 464 574 - -
Cone1ag1213 805 MobiDBLite consensus disorder prediction 425 458 - -
Cone1ag1213 805 ProSiteProfiles Protein kinase domain profile. 494 785 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1213 805 ProSitePatterns Protein kinases ATP-binding region signature. 500 522 IPR017441 GO:0005524(InterPro)
Cone1ag1213 805 FunFam Serine/threonine-protein kinase-like protein CCR4 575 798 - -
Cone1ag1213 805 Gene3D Transferase(Phosphotransferase) domain 1 575 794 - -
Cone1ag1213 805 FunFam serine/threonine-protein kinase-like protein CCR1 464 574 - -
Cone1ag1213 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag1213 805 SMART serkin_6 494 785 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag1213 805 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 31 795 IPR044815 GO:0004674(InterPro)
Cone1ag1213 805 SUPERFAMILY RCC1/BLIP-II 27 264 IPR009091 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1191 Cone-Chr17:8729047 Cone1ag1213 Cone-Chr1:55958536 2.69E-61 dispersed
Cone18ag0394 Cone-Chr18:1936130 Cone1ag1213 Cone-Chr1:55958536 0 dispersed
Cone1ag1213 Cone-Chr1:55958536 Cone4ag1198 Cone-Chr4:10092783 2.81E-106 dispersed
Cone19ag1255 Cone-Chr19:8608207 Cone1ag1213 Cone-Chr1:55958536 1.43E-52 transposed
Cone1ag1213 Cone-Chr1:55958536 Cone11ag1217 Cone-Chr11:9142229 1.52E-48 wgd
Cone1ag1213 Cone-Chr1:55958536 Cone18ag0374 Cone-Chr18:1825674 3.76E-50 wgd
Cone1ag1213 Cone-Chr1:55958536 Cone5ag0200 Cone-Chr5:832971 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82503 PF02037 SAP 1.70E-09 CL0306 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1213 - - - 0.0