Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1220 ATGACTATAGAGAAAAAAGCTTGGCTAGAAAGAGATAAGGCACAAGATAAGCCTCACTTTGTATTCACACATGTTACCAAATTCCTCCTCTTTTGCTTATTTAGCCCCACTCCCACTCCCACTCCCACTCCCACTCCCACCACTGCACTACACTTCACTTCCACTGCACTACCCATCATCATGGCCGCCACAACCGCCGCTGCCACGTCATCATATTTATTCGGAACCCGGATCCATAGCCCGAGCCCATCAAACATTGGCAGATTCCGCGCTTTACTCGGATTCCGCATAAAGAAATCACCCGTGCCTAAGAAAACCGCGCCCAAGCCCAAACCCGATACGGACCGGCTCGTCTGGTTTCCGGGTGCGGAGCCGCCCGAATGGCTAGACGGATCGCTGGTCGGTGACCGCGGGTTCGACCCGCTCGGGCTCGCTAAACCTGCAGAGTATTTGCAGTTCGACTTGGACTCGTTGGACCAGAACTTGGCCAAGAATGAGGCCGGAGACGTGATCGGCATCCGGATCGACAGCACAGAGGTCCAACCCACACCGTTTCAACCTTACTCCGAGGTGTTTGGAATTCAGAGGTTTCGAGAATGTGAGGTGATTCATGGGAGGTGGGCCATGCTCGGTGCTCTTGGCGCTCTTTCCGTCGAAGCTCTCACCGGCGTTTCATGGCAAGATGCTGGAAAGGTGGAGTTAGTGGAAGGATCGTCATATCTAGGGCTTCCACTACCATTTTCGATTACGACGTTGATATGGATCGAGGTGTTAGTGATTGGATACATTGAATTTCAGAGAAATGCAGAATTGGACCCAGAGAAAAGGTTGTATCCAGGCGGGCAGTTCTTTGATCCTCTAGGTCTGGCTAAGGATCCAGAAGAGAAGGAAAGACTCCAGCTTGCAGAGATCAAGCATTCAAGGTTAGCAATGGTGGTGTTTCTCATTTTTGGGATCCAAGCTGCTGTTACTGGAAAGGGTCCTATCAGTTTTCTGGCTACCTTCAACAAGTGA 1014 51.18 MTIEKKAWLERDKAQDKPHFVFTHVTKFLLFCLFSPTPTPTPTPTPTTALHFTSTALPIIMAATTAAATSSYLFGTRIHSPSPSNIGRFRALLGFRIKKSPVPKKTAPKPKPDTDRLVWFPGAEPPEWLDGSLVGDRGFDPLGLAKPAEYLQFDLDSLDQNLAKNEAGDVIGIRIDSTEVQPTPFQPYSEVFGIQRFRECEVIHGRWAMLGALGALSVEALTGVSWQDAGKVELVEGSSYLGLPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGQFFDPLGLAKDPEEKERLQLAEIKHSRLAMVVFLIFGIQAAVTGKGPISFLATFNK 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55986365 55987469 + Conep01aG0126900.1 Cone1ag1220 431911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1220 337 SUPERFAMILY Chlorophyll a-b binding protein 112 334 - -
Cone1ag1220 337 Pfam Chlorophyll A-B binding protein 125 321 IPR022796 -
Cone1ag1220 337 Gene3D Chlorophyll a/b binding protein domain 118 337 - -
Cone1ag1220 337 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 69 334 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1220 Cone-Chr1:55986365 Cone1ag1346 Cone-Chr1:56525339 9.13E-32 dispersed
Cone1ag1220 Cone-Chr1:55986365 Cone10ag0383 Cone-Chr10:1812105 9.77E-142 wgd
Cone1ag1220 Cone-Chr1:55986365 Cone3ag0419 Cone-Chr3:2060046 3.96E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1220 K08915 - gmx:100820335 449.129