Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1227 ATGGAGGGCAAGGAAGAAGATGTTAGATTGGGAGCAAACAAGTTTCCAGAGAGGCAGCCGATCGGAACGGCAGCGCAAAGCCAAGACGAAGGTAAGGACTACAGAGAGCCACCTCCTGCACCATTATTCGAACCAGGGGAGCTTACTTCATGGTCCTTCTACAGAGCTGGAATCGCGGAGTTCTTTGCTACCTTTCTCTTCCTTTACATCACGATCTTAACTGTGATGGGTGTGTTAAGGACAAGCCAGGCCAACGGCGGCAGCAAGTGTGGAACAGTCGGGATTCAGGGCATCGCTTGGGCTTTTGGCGGTACCATCTTCGCCCTCGTCTACAGCACCGCCGGCATCTCTGGGGGTCACATAAATCCGGCGGTGACTTTCGGGCTGTTTTTGGCGAGGAAGTTGTCGTTGACTAGGGCGGTGTTCTACATAGTGATGCAAACGCTTGGAGCGATATGTGGTGCAGGAGTGGTCAAAGGGTTCCAGCCAAAGCTTTACCAGTCTTTGGGCGGCGGTGCTAACTCCGTCAACCATGGCTACACCAAGGGCGACGGTCTTGGTGCTGAGATCATCGGTACTTTCGTCCTTGTCTACACTGTTTTCTCCGCCACCGATGCTAAGCGGAGCGCTAGAGACTCTCACGTGCCTATTTTGGCGCCGTTGCCTATTGGGTTCGCGGTTTTCTTGGTACACTTGGCGACTATTCCAATCACCGGCACCGGAATTAACCCGGCAAGGAGTTTGGGTGCGGCGATCATTTTCAACGAGAAAAGTGCTTGGAATGACCACTGGATTTTCTGGGTGGGACCGTTCATTGGAGCAGCACTAGCAGCTTTGTACCATCAGGTGGTGATCAGAGCCATTCCCTTCAAGAACAAGTGA 882 52.95 MEGKEEDVRLGANKFPERQPIGTAAQSQDEGKDYREPPPAPLFEPGELTSWSFYRAGIAEFFATFLFLYITILTVMGVLRTSQANGGSKCGTVGIQGIAWAFGGTIFALVYSTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQTLGAICGAGVVKGFQPKLYQSLGGGANSVNHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNEKSAWNDHWIFWVGPFIGAALAALYHQVVIRAIPFKNK 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56019949 56021635 + Conep01aG0127600.1 Cone1ag1227 431918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1227 293 SUPERFAMILY Aquaporin-like 47 286 IPR023271 -
Cone1ag1227 293 FunFam Probable aquaporin PIP1-2 40 293 - -
Cone1ag1227 293 CDD MIP 55 284 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag1227 293 Pfam Major intrinsic protein 47 281 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag1227 293 MobiDBLite consensus disorder prediction 1 39 - -
Cone1ag1227 293 ProSitePatterns MIP family signature. 120 128 IPR022357 -
Cone1ag1227 293 PRINTS Major intrinsic protein family signature 264 284 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag1227 293 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag1227 293 PRINTS Major intrinsic protein family signature 102 126 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag1227 293 PRINTS Major intrinsic protein family signature 224 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag1227 293 PRINTS Major intrinsic protein family signature 139 158 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag1227 293 PRINTS Major intrinsic protein family signature 188 206 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag1227 293 Gene3D Glycerol uptake facilitator protein. 40 292 IPR023271 -
Cone1ag1227 293 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 291 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Cone1ag1227 293 NCBIfam MIP family channel protein 59 281 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1227 Cone-Chr1:56019949 Cone6ag0785 Cone-Chr6:4000558 4.31E-175 dispersed
Cone1ag1227 Cone-Chr1:56019949 Cone5ag0214 Cone-Chr5:905811 4.08E-209 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1227 K09872 - csv:101215145 530.406