Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone1ag1243 | ATGGCGGCCATAGAGGTGTCTCATCATGTAGTGCGTTTAGAAGAAGGTGCTTGCCGGAGCTCCGTAGCCAGCTCGGGCACGAGTGACGTGTCAGATTACGAGCGCAGATGCTCGAGTACTGAGTCTGGAGTTGAGATTGTTGGGTTGGTGGGTGAGAAAGGGAGTGGATCCTCTGCATCTTTGTGTTCGGTTGATGATGATGATCAGGTGGATCTGGAATGTGGGGTCCCGGTGGTTAAGGTACAGATGGAAAAAGTCGAGAGGGATTGTAGGATTTGTCATCTGAGCATGGATGCTGCGAATCATGAATCTGGGATTCCTATTGAGCTTGGATGTTGCTGTAAGGATGATTTAGCTGCTGCTCATAAGCAATGTGCTGAGGCCTGGTTCAAGATCAAGGGTAACAAAACGTGCGAGATATGTGGGTCCACTGCTCGGAACGTCTTGGGTGTGAACGAAACGGAGTTGATAGAACAGTGGAACGAGTCTAACAATGCTACAACGGCGTCCTCAACAACAGCACCCGCTCCTTCAACAGAGACAAGAAACTTCTGGCAGGGACATCGCTTCCTTAATTTCCTGTTAGCTTGTATGGTCTTTGCCTTTGTCATCTCCTGGCTTTTTCATTTCAATGTACCCTCGTAA | 645 | 48.84 | MAAIEVSHHVVRLEEGACRSSVASSGTSDVSDYERRCSSTESGVEIVGLVGEKGSGSSASLCSVDDDDQVDLECGVPVVKVQMEKVERDCRICHLSMDAANHESGIPIELGCCCKDDLAAAHKQCAEAWFKIKGNKTCEICGSTARNVLGVNETELIEQWNESNNATTASSTTAPAPSTETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS | 214 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 56066039 | 56067904 | + | Conep01aG0129200.1 | Cone1ag1243 | 431934 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone1ag1243 | 214 | SUPERFAMILY | RING/U-box | 87 | 145 | - | - | |
| Cone1ag1243 | 214 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 82 | 148 | IPR011016 | GO:0008270(InterPro) | |
| Cone1ag1243 | 214 | Pfam | RING-variant domain | 90 | 141 | IPR011016 | GO:0008270(InterPro) | |
| Cone1ag1243 | 214 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 78 | 151 | IPR013083 | - | |
| Cone1ag1243 | 214 | SMART | ringv_2 | 89 | 142 | IPR011016 | GO:0008270(InterPro) | |
| Cone1ag1243 | 214 | PANTHER | ZINC FINGER, RING-CH-TYPE | 22 | 213 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone1ag0217 | Cone-Chr1:1322891 | Cone1ag1243 | Cone-Chr1:56066039 | 3.32E-31 | dispersed | |
| Cone1ag1243 | Cone-Chr1:56066039 | Cone10ag0353 | Cone-Chr10:1675430 | 1.74E-22 | wgd | |
| Cone1ag1243 | Cone-Chr1:56066039 | Cone13ag1373 | Cone-Chr13:10010431 | 1.04E-67 | wgd | |
| Cone1ag1243 | Cone-Chr1:56066039 | Cone19ag1368 | Cone-Chr19:9052368 | 5.26E-64 | wgd | |
| Cone1ag1243 | Cone-Chr1:56066039 | Cone3ag0384 | Cone-Chr3:1932798 | 3.46E-52 | wgd | |
| Cone1ag1243 | Cone-Chr1:56066039 | Cone5ag0225 | Cone-Chr5:957190 | 7.67E-136 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone1ag1243 | - | - | - | 0.0 |