Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1243 ATGGCGGCCATAGAGGTGTCTCATCATGTAGTGCGTTTAGAAGAAGGTGCTTGCCGGAGCTCCGTAGCCAGCTCGGGCACGAGTGACGTGTCAGATTACGAGCGCAGATGCTCGAGTACTGAGTCTGGAGTTGAGATTGTTGGGTTGGTGGGTGAGAAAGGGAGTGGATCCTCTGCATCTTTGTGTTCGGTTGATGATGATGATCAGGTGGATCTGGAATGTGGGGTCCCGGTGGTTAAGGTACAGATGGAAAAAGTCGAGAGGGATTGTAGGATTTGTCATCTGAGCATGGATGCTGCGAATCATGAATCTGGGATTCCTATTGAGCTTGGATGTTGCTGTAAGGATGATTTAGCTGCTGCTCATAAGCAATGTGCTGAGGCCTGGTTCAAGATCAAGGGTAACAAAACGTGCGAGATATGTGGGTCCACTGCTCGGAACGTCTTGGGTGTGAACGAAACGGAGTTGATAGAACAGTGGAACGAGTCTAACAATGCTACAACGGCGTCCTCAACAACAGCACCCGCTCCTTCAACAGAGACAAGAAACTTCTGGCAGGGACATCGCTTCCTTAATTTCCTGTTAGCTTGTATGGTCTTTGCCTTTGTCATCTCCTGGCTTTTTCATTTCAATGTACCCTCGTAA 645 48.84 MAAIEVSHHVVRLEEGACRSSVASSGTSDVSDYERRCSSTESGVEIVGLVGEKGSGSSASLCSVDDDDQVDLECGVPVVKVQMEKVERDCRICHLSMDAANHESGIPIELGCCCKDDLAAAHKQCAEAWFKIKGNKTCEICGSTARNVLGVNETELIEQWNESNNATTASSTTAPAPSTETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 214
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 56066039 56067904 + Conep01aG0129200.1 Cone1ag1243 431934
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1243 214 SUPERFAMILY RING/U-box 87 145 - -
Cone1ag1243 214 ProSiteProfiles Zinc finger RING-CH-type profile. 82 148 IPR011016 GO:0008270(InterPro)
Cone1ag1243 214 Pfam RING-variant domain 90 141 IPR011016 GO:0008270(InterPro)
Cone1ag1243 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 151 IPR013083 -
Cone1ag1243 214 SMART ringv_2 89 142 IPR011016 GO:0008270(InterPro)
Cone1ag1243 214 PANTHER ZINC FINGER, RING-CH-TYPE 22 213 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0217 Cone-Chr1:1322891 Cone1ag1243 Cone-Chr1:56066039 3.32E-31 dispersed
Cone1ag1243 Cone-Chr1:56066039 Cone10ag0353 Cone-Chr10:1675430 1.74E-22 wgd
Cone1ag1243 Cone-Chr1:56066039 Cone13ag1373 Cone-Chr13:10010431 1.04E-67 wgd
Cone1ag1243 Cone-Chr1:56066039 Cone19ag1368 Cone-Chr19:9052368 5.26E-64 wgd
Cone1ag1243 Cone-Chr1:56066039 Cone3ag0384 Cone-Chr3:1932798 3.46E-52 wgd
Cone1ag1243 Cone-Chr1:56066039 Cone5ag0225 Cone-Chr5:957190 7.67E-136 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1243 - - - 0.0