Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1257 ATGGCTGAAATTTGCTGTGGACTCGTTGGGGAAAGTTCTGACGCTTCGGCACAGATTGAGAAGGCGACGTTGCAACGCCGCCGGAGACAAGATCTCCTTCCGTTCAAGCTGCTCTCTGCTTCTACCGTGCCAAAGCTGGTCCTTGAAAGTAGCAGGAAGCGCGCAAGGCTCGATCTCCAGCCACGTGAGTGCGATAACGCCGTTGAAAATAGTTCAGTAAAGGATGTCCAAGACGTCGACGCAGCTCAATCGGAGGGAAATGTTGTTTTGCGAGCTGATCCGGCGGTGAATCCTATTGACTCTTTGAAGTCTTCGCAGGTTGAAGACGAATATGATCTGCTTCCTAAATTTGGCGTCACCTCCGTGTGCGGTAGGAGAAGAGACATGGAGGATGCAGTATCAATTCACCCATATTTCTGCAACCAGAAAGATCAGAATTCGAACGCTATGCACTTTTATGGCGTGTTCGACGGCCATGGCTGCTCTCATGTTGCCATCAAGTGTAAAGAGCGGTTGCATCATATAGTGGAGGAAGAGCTTGAAGGGGAGGGAGAGTCCGTTGAGTGGAAGAGTATGATGGAACGGAGCTTTGCTCGCATTGACACGGAGGTTAAGGAATCAGGCGACGAGGACCGTGTCAAAAACTCGAACTGCAGATGCGAACTTCAGACTCCTCAGTGCGACGCCGTTGGATCGACAGCTGTTGCTGCTGTTTTAACGCGAGATAAAATCATCGTCTCCAACTGTGGCGATTCCCGGGCTGTTCTTTGCCGGAACGGCGTTGCCATCCCTCTCTCATCTGATCACAAGCCTGATCGGCCCGACGAACTGTCCCGGATCCAAGAAGCTGGTGGGCGTGTGATCTATTGGGACGGGGCGAGGGTCCTTGGAGTGCTAGCCATGTCCCGAGCGATAGGAGATAACTACCTGAAACCGTTCGTGATCCCTGACCCGGAGGTGGTGATGATGGACCGGACGGCGGAGGATGAGTGTATGATAATAGCGACTGATGGTCTGTGGGACGTGGTCACAAACGATACAGCTTGTAGCGTGGCTCGTATGTGCCTCAAAGCGCAGAAGCCGGCGTCGCCACCAAGGTCGCCTGGGATTGTTGACGTGACCGTGGGTCCATCCTATAGTTCTGACAAGGCTTGCTCGGACGCATCCATTTTGCTAACCAAGTTGGCTTTGGCTAGACACAGTATGGACAATGTTAGCGTCGTGGTCATCGATTTGAAGAGCAATCGGCAACCTCACTTAGTCTTTTAG 1269 52.4 MAEICCGLVGESSDASAQIEKATLQRRRRQDLLPFKLLSASTVPKLVLESSRKRARLDLQPRECDNAVENSSVKDVQDVDAAQSEGNVVLRADPAVNPIDSLKSSQVEDEYDLLPKFGVTSVCGRRRDMEDAVSIHPYFCNQKDQNSNAMHFYGVFDGHGCSHVAIKCKERLHHIVEEELEGEGESVEWKSMMERSFARIDTEVKESGDEDRVKNSNCRCELQTPQCDAVGSTAVAAVLTRDKIIVSNCGDSRAVLCRNGVAIPLSSDHKPDRPDELSRIQEAGGRVIYWDGARVLGVLAMSRAIGDNYLKPFVIPDPEVVMMDRTAEDECMIIATDGLWDVVTNDTACSVARMCLKAQKPASPPRSPGIVDVTVGPSYSSDKACSDASILLTKLALARHSMDNVSVVVIDLKSNRQPHLVF 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56127181 56129182 - Conep01aG0130700.1 Cone1ag1257 431948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1257 422 FunFam Protein phosphatase 2C 50 103 419 - -
Cone1ag1257 422 ProSitePatterns PPM-type phosphatase domain signature. 152 160 IPR000222 GO:0043169(InterPro)
Cone1ag1257 422 CDD PP2Cc 116 412 IPR001932 -
Cone1ag1257 422 Pfam Protein phosphatase 2C 117 363 IPR001932 -
Cone1ag1257 422 SUPERFAMILY PP2C-like 113 413 IPR036457 -
Cone1ag1257 422 SMART PP2C_4 106 410 IPR001932 -
Cone1ag1257 422 ProSiteProfiles PPM-type phosphatase domain profile. 116 412 IPR001932 -
Cone1ag1257 422 Gene3D - 111 420 IPR036457 -
Cone1ag1257 422 PANTHER PROTEIN PHOSPHATASE 83 411 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0629 Cone-Chr18:3239120 Cone1ag1257 Cone-Chr1:56127181 6.96E-14 dispersed
Cone1ag1257 Cone-Chr1:56127181 Cone5ag0672 Cone-Chr5:2877495 3.39E-79 dispersed
Cone1ag0610 Cone-Chr1:5960182 Cone1ag1257 Cone-Chr1:56127181 6.96E-145 wgd
Cone1ag1257 Cone-Chr1:56127181 Cone5ag0241 Cone-Chr5:1020716 2.92E-269 wgd
Cone1ag1257 Cone-Chr1:56127181 Cone5ag1121 Cone-Chr5:4987859 1.90E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1257 K14497 - mdm:114826111 474.167