Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1260 ATGGCGAATCCATGGTGGGCTGGAAATGTAGCCATGAGAGGTGGTGTGGACCCCATATCTCCATCTCCTTCCCTCCAACTCAAGAACCCAGAAGATCAGCAGCAGCAACAACAACAACATGGGTCGGCGGGATTGAACCGCCCCTTCGTTCTAATCCAAAGAGATCAGGAAACGACTACAGATAGTAGCAGAAGCAACCCAACCAACTCCGCCACAAGAAAAAGAACCCTGGAAGACGATGAAGTAAGCCAAGAAAACAACCAACCAGTCTCCACTCCCCAAGACAGCACCGAACCGGGCTCCAACAGTGCCAGCTCATCCCGCCGCCCTCGTGGCCGCCCTGCCGGGTCCAAAAACAAGCCAAAACCACCCGTCGTAGTCGCCAAAGAAACCCCAAATTCTCTAAGAAGCCACGTGTTGGAAATCAGCAGTGGGACCGACATTGTAGAGAGCATTGCCACCTTTGCTCAAAGCCGCCATAGAGGAGTCTCGGTCCTTAGCGGCAGCGGCATTGTGACCAATGTTACTTTTCGGCAACCGGCTGCACCTGGTGGAGTTATCTCCCTCCAAGGCAGGTTTGAGATATTGTCTTTATCCGGAGCATTCCTGCCCGCCCCGTCCCCGCCTGGGGCAAGTGGTCTGACCGTGTATCTTGCCGGTGGTCAAGGGCAGGTCGTTGGCGGTACTGTGGTGGGTGCACTCACGGCGTCCGGGCCAGTTATGGTGATTGCAGCCACATTTACGAATGCAATGTTTGAGAGATTGCCGTTTAATGATCCGGATAATGAGGTGGTGACACCCCAAGATGGTATGCGATCTGCTGTGGTTAATTTGGGGACTACGGGAAATTCGACGTCTCGGGGAATGAACGAGGAACCTCCAGCTTCTATTGCTGCTGCTGCTGCTGTTTCAATGGTGGCACCTATGTACAATTGGGCATCGAATGATCAGACGCCGAACCATGATGGGTTTTGGAGTACTCCTGCTAGGCCTCCTTCCTCTAATTACTGA 1011 53.41 MANPWWAGNVAMRGGVDPISPSPSLQLKNPEDQQQQQQQHGSAGLNRPFVLIQRDQETTTDSSRSNPTNSATRKRTLEDDEVSQENNQPVSTPQDSTEPGSNSASSSRRPRGRPAGSKNKPKPPVVVAKETPNSLRSHVLEISSGTDIVESIATFAQSRHRGVSVLSGSGIVTNVTFRQPAAPGGVISLQGRFEILSLSGAFLPAPSPPGASGLTVYLAGGQGQVVGGTVVGALTASGPVMVIAATFTNAMFERLPFNDPDNEVVTPQDGMRSAVVNLGTTGNSTSRGMNEEPPASIAAAAAVSMVAPMYNWASNDQTPNHDGFWSTPARPPSSNY 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56147160 56148187 + Conep01aG0131000.1 Cone1ag1260 431951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1260 336 MobiDBLite consensus disorder prediction 317 336 - -
Cone1ag1260 336 MobiDBLite consensus disorder prediction 22 44 - -
Cone1ag1260 336 CDD DUF296 136 219 IPR005175 -
Cone1ag1260 336 Gene3D - 135 264 - -
Cone1ag1260 336 MobiDBLite consensus disorder prediction 83 112 - -
Cone1ag1260 336 SUPERFAMILY AF0104/ALDC/Ptd012-like 132 261 - -
Cone1ag1260 336 ProSiteProfiles PPC domain profile profile. 132 268 IPR005175 -
Cone1ag1260 336 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 65 331 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone1ag1260 336 FunFam AT-hook motif nuclear-localized protein 135 263 - -
Cone1ag1260 336 Pfam Plants and Prokaryotes Conserved (PCC) domain 136 248 IPR005175 -
Cone1ag1260 336 MobiDBLite consensus disorder prediction 1 131 - -
Cone1ag1260 336 MobiDBLite consensus disorder prediction 52 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1260 Cone-Chr1:56147160 Cone3ag0681 Cone-Chr3:3469813 5.35E-73 dispersed
Cone1ag1260 Cone-Chr1:56147160 Cone11ag1145 Cone-Chr11:8815268 4.00E-50 wgd
Cone1ag1260 Cone-Chr1:56147160 Cone18ag0437 Cone-Chr18:2129411 2.98E-52 wgd
Cone1ag1260 Cone-Chr1:56147160 Cone5ag0246 Cone-Chr5:1041605 1.11E-205 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1260 - - - 0.0