Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag1273 ATGGCTATCCTCTCCATTGTAAACTTGGTAGCATTTTTGACACTTGCTGTTGTGCAGGCCAGAAGCCCTGGAATTAACTCCGGTCAGCCATGGCAGACCGCCCATGCGACCTTCTATGGCGGCAGTGACGCGTCTGGAACAATGGGAGGAGCATGTGGTTATGGAAACTTATACAGCCAAGGCTACGGCGTGAATACAGCAGCTCTAAGCACCGCGCTCTTCAACAATGGCGTCACGTGCGGAGCATGTTTCGAGCTCAAGTGCTATAATGACCCGCAATGGTGCCTCTCTGGCAACCCTTCCGTCTTGATAACTGCCACCAACTTCTGCCCTCCGAACTACGACCTTCCCAGCGACGATGGCGGCTGGTGCAACCCTCCTCGGACCCACTTCGATCTCGCCATGCCCATGTTCCTTAAAATTGCGGAATATCGAGCCGGAATTGTACCAGTCTCTTATCGCCGGGTGCCATGTCAGAAAAAAGGCGGGATCAGGTTTACGATCAACGGTTTCAGGTACTTCAATTTGGTTTTGATCTCGAACGTGGCAGGTGCAGGGGATATAGTGAGGGTGAGCGTTAAGGGGTCGAAGACAGGGTGGATGAGTATGAGCCGTAACTGGGGTCAAAACTGGCAGTCAAACGCCGTTTTGGTTGGTCAGTCACTCTCGTTTAGCGTCACAACAAGTGACCTCCGTACCTCCACTTCATGGAACATTGTCCCGTCTGATTGGCAGTTTGGTCAGACTTTCACCGGAAGCAATTTCATAGTCTAA 774 51.94 MAILSIVNLVAFLTLAVVQARSPGINSGQPWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGVTCGACFELKCYNDPQWCLSGNPSVLITATNFCPPNYDLPSDDGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCQKKGGIRFTINGFRYFNLVLISNVAGAGDIVRVSVKGSKTGWMSMSRNWGQNWQSNAVLVGQSLSFSVTTSDLRTSTSWNIVPSDWQFGQTFTGSNFIV 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56207894 56209874 + Conep01aG0132400.1 Cone1ag1273 431964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag1273 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576(InterPro)
Cone1ag1273 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576(InterPro)
Cone1ag1273 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576(InterPro)
Cone1ag1273 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576(InterPro)
Cone1ag1273 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576(InterPro)
Cone1ag1273 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576(InterPro)
Cone1ag1273 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Cone1ag1273 257 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
Cone1ag1273 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664(InterPro)
Cone1ag1273 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664(InterPro)
Cone1ag1273 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664(InterPro)
Cone1ag1273 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664(InterPro)
Cone1ag1273 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664(InterPro)
Cone1ag1273 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664(InterPro)
Cone1ag1273 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664(InterPro)
Cone1ag1273 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664(InterPro)
Cone1ag1273 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664(InterPro)
Cone1ag1273 257 Gene3D - 15 159 IPR036908 -
Cone1ag1273 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Cone1ag1273 257 Gene3D - 163 255 IPR036749 -
Cone1ag1273 257 Pfam Lytic transglycolase 66 153 IPR009009 -
Cone1ag1273 257 FunFam Expansin 163 255 - -
Cone1ag1273 257 PANTHER EXPANSIN-A15 9 255 IPR002963 GO:0009664(InterPro)
Cone1ag1273 257 SMART dpbb_1 66 153 IPR007112 -
Cone1ag1273 257 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Cone1ag1273 257 CDD DPBB_EXPA_N 30 158 - -
Cone1ag1273 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
Cone1ag1273 257 FunFam Expansin 20 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1273 Cone-Chr1:56207894 Cone5ag0142 Cone-Chr5:611803 8.85E-130 dispersed
Cone1ag0635 Cone-Chr1:6129085 Cone1ag1273 Cone-Chr1:56207894 6.37E-159 wgd
Cone1ag1273 Cone-Chr1:56207894 Cone10ag0314 Cone-Chr10:1493173 3.43E-149 wgd
Cone1ag1273 Cone-Chr1:56207894 Cone11ag1137 Cone-Chr11:8754627 7.43E-160 wgd
Cone1ag1273 Cone-Chr1:56207894 Cone18ag0444 Cone-Chr18:2169890 1.38E-160 wgd
Cone1ag1273 Cone-Chr1:56207894 Cone3ag0344 Cone-Chr3:1750135 1.41E-141 wgd
Cone1ag1273 Cone-Chr1:56207894 Cone4ag1056 Cone-Chr4:9198068 1.66E-154 wgd
Cone1ag1273 Cone-Chr1:56207894 Cone5ag0260 Cone-Chr5:1106128 3.30E-181 wgd
Cone1ag1273 Cone-Chr1:56207894 Cone5ag1140 Cone-Chr5:5119294 4.45E-159 wgd
Cone1ag1273 Cone-Chr1:56207894 Cone7ag1075 Cone-Chr7:8181630 8.14E-153 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag1273 - - - 0.0